Wood decomposition in water is a key ecosystem process driven by diverse microbial taxa that likely differ in their affinities for freshwater, estuarine and marine habitats. How these decomposer communities assemble in situ or potentially colonize from other habitats remains poorly understood. At three watersheds on Coiba Island, Panama, we placed replicate sections of branch wood of a single tree species on land, and in freshwater, estuarine and marine habitats that constitute a downstream salinity gradient. We sequenced archaea, bacteria and fungi from wood samples collected after 3, 9 and 15 months to examine microbial community composition, and to examine habitat specificity and abundance patterns. We found that these microbial communities were broadly structured by similar factors, with a strong effect of salinity, but little effect of watershed identity on compositional variation. Moreover, common aquatic taxa were also present in wood incubated on land. Our results suggest that either taxa dispersed to both terrestrial and aquatic habitats, or microbes with broad habitat ranges were initially present in the wood as endophytes. Nonetheless, these habitat generalists varied greatly in abundance across habitats suggesting an important role for habitat filtering in maintaining distinct aquatic communities in freshwater, estuarine and marine habitats.
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Abstract Pioneer trees require high‐light environments for successful seedling establishment. Consequently, seeds of these species often persist in the soil seed bank (SSB) for periods ranging from several weeks to decades. How they survive despite extensive pressure from seed predators and soil‐borne pathogens remains an intriguing question.
This study aims to test the hypotheses that decades‐old seeds collected from the SSB in a lowland tropical forest remain viable by (i) escaping infection by fungi, which are major drivers of seed mortality in tropical soils, and/or (ii) maintaining high levels of seed dormancy and seed coat integrity when compared to inviable seeds.
We collected seeds of
Trema micrantha andZanthoxylum ekmanii at Barro Colorado Island, Panama, from sites where adult trees previously occurred in the past 30 years. We used carbon dating to measure seed age and characterized seed coat integrity, seed dormancy and fungal communities.Viable seeds from the SSB ranged in age from 9 to 30 years for
T. micrantha , and 5 to 33 years forZ. ekmanii . We found no evidence that decades‐old seeds maintain high levels of seed dormancy or seed coat integrity. Fungi were rarely detected in fresh seeds (no soil contact), but phylogenetically diverse fungi were detected often in seeds from the SSB. Although fungal infections were more commonly detected in inviable seeds than in viable seeds, a lack of differences in fungal diversity and community composition between viable and inviable seeds suggested that viable seeds are not simply excluding fungal species to survive long periods in the SSB.Synthesis. Our findings reveal the importance of a previously understudied aspect of seed survival, where the impact of seed–microbial interactions may be critical to understand long‐term persistence in the SSB.Read the free
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Abstract Variation in decay rates across woody species is a key uncertainty in predicting the fate of carbon stored in deadwood, especially in the tropics. Quantifying the relative contributions of biotic decay agents, particularly microbes and termites, under different climates and across species with diverse wood traits could help explain this variation.
To fill this knowledge gap, we deployed woody stems from 16 plant species native to either rainforest (
n = 10) or savanna (n = 6) in northeast Australia, with and without termite access. For comparison, we also deployed standardized, non‐native pine blocks at both sites. We hypothesized that termites would increase rates of deadwood decay under conditions that limit microbial activity. Specifically, termite contributions to wood decay should be greater under dry conditions and in wood species with traits that constrain microbial decomposers.Termite discovery of stems was surprisingly low with only 17.6% and 22.6% of accessible native stems discovered in the rainforest and savanna respectively. Contrary to our hypothesis, stems discovered by termites decomposed faster only in the rainforest. Termites discovered and decayed pine blocks at higher rates than native stems in both the rainforest and savanna.
We found significant variation in termite discovery and microbial decay rates across native wood species within the same site. Although wood traits explained 85% of the variation in microbial decay, they did not explain termite‐driven decay. For stems undiscovered by termites, decay rates were greater in species with higher wood nutrient concentrations and syringyl:guiacyl lignin ratios but lower carbon concentrations and wood densities.
Synthesis . Ecosystem‐scale predictions of deadwood turnover and carbon storage should account for the impact of wood traits on decomposer communities. In tropical Australia, termite‐driven decay was lower than expected for native wood on the ground. Even if termites are present, they may not always increase decomposition rates of fallen native wood in tropical forests. Our study shows how the drivers of wood decay differ between Australian tropical rainforest and savanna; further research should test whether such differences apply world‐wide. -
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Abstract Identifying the drivers of decomposition is critical for understanding carbon cycling dynamics in forest ecosystems. Woody biomass is an important pool of carbon, composed of bark and underlying wood which vary in structure, nutrient concentrations and exposure to the environment. We hypothesized that higher nutrient concentrations in bark would speed the decomposition of underlying wood, and that this effect would be greater in streams, where nutrients are less available to decomposers than on land.
Replicate branches of three tree species, with and without bark, were placed in streams and on land in a lowland tropical forest in Panama. After 3 and 11 months of decomposition, we measured mass loss and nitrogen (N) concentrations and sequenced the fungal and bacterial communities of both wood and bark tissues.
While bark decomposed faster than the underlying wood and had higher N concentrations, bark presence slowed wood mass loss. Nitrogen concentration could account for interspecific variation in wood mass loss, but not bark mass loss. In contrast, bark mass loss, but not wood mass loss, was faster in streams than on land, suggesting fragmentation is more important for bark mass loss in streams. Differences in fungal and bacterial community composition between bark and wood substrates were significant but small.
Our results indicate that bark can slow wood decomposition instead of promoting it, and that at least for branch wood, the primary drivers of decomposition differ between bark and wood. Differences in the factors driving decomposition rate between bark and wood suggest that the contribution of bark to the decomposition of woody biomass may depend on habitat.
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Abstract Previous theoretical work has highlighted the potential for natural enemies to mediate the coexistence of species with similar life histories via density‐dependent effects on survivorship. For plant pathogens to play this role, they must differ in their ability to infect or induce disease in different host plant species. In tropical forests characterized by high diversity, these effects must extend to phylogenetically closely related species pairs. Mortality at the seed and seedling stage strongly influences the abundance and distribution of tropical tree species, but the host preferences and spatial distributions of fungi are rarely determined.
We examined how host species identity, relatedness and seed viability influence the composition of fungal communities associated with seeds of four co‐occurring pioneer trees (
Cecropia insignis ,C. longipes ,C. peltata andJacaranda copaia ). Seeds were buried in mesh bags in five common gardens in the understorey of a lowland tropical forest in Panama and retrieved at intervals from 1 to 30 months. A subset of the seeds in each bag was used to determine germination success. One half of each remaining seed was tested for viability; and the other half was used to culture and identify seed‐infecting fungi.Seeds were infected by fungi after burial. Although fungal communities differed in viable versus dead seeds, and across burial locations, community composition primarily varied as a function of plant species identity (30.7% of variation in community composition vs. 4.5% for viability and location together), even for congeneric
Cecropia species. Phylogenetic reconstruction showed that relatedness of fungi mostly reflected differences betweenJacaranda (Bignoniaceae) andCecropia (Urticaceae).Although the proportion of germinable seeds decreased gradually over time for all species, intraspecific variation in survival was high at the same location (e.g. ranging from 0% to 100% for
C. peltata ) suggesting variable exposure or susceptibility to seed pathogens.Synthesis . Our study provides evidence under field conditions that congeneric tree species with similar life history traits differ markedly in seed‐associated fungal communities when exposed to the same soil‐borne fungi. This is a critical first step supporting pathogen‐mediated coexistence of closely related tree species.
