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  1. Abstract

    Many aspects of global ecosystem degradation are well known, but the ecological implications of variation in these effects over scales of kilometers and years have not been widely considered. On tropical coral reefs, kilometer-scale variation in environmental conditions promotes a spatial mosaic of coral communities in which spatial insurance effects could enhance community stability. To evaluate whether these effects are important on coral reefs, we explored variation over 2006–2019 in coral community structure and environmental conditions in Moorea, French Polynesia. We studied coral community structure at a single site with fringing, back reef, and fore reef habitats, and used this system to explore associations among community asynchrony, asynchrony of environmental conditions, and community stability. Coral community structure varied asynchronously among habitats, and variation among habitats in the daily range in seawater temperature suggested it could be a factor contributing to the variation in coral community structure. Wave forced seawater flow connected the habitats and facilitated larval exchange among them, but this effect differed in strength among years, and accentuated periodic connectivity among habitats at 1–7 year intervals. At this site, connected habitats harboring taxonomically similar coral assemblages and exhibiting asynchronous population dynamics can provide insurance against extirpation, and may promote community stability. If these effects apply at larger spatial scale, then among-habitat community asynchrony is likely to play an important role in determining reef-wide coral community resilience.

     
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  2. Abstract

    The modern study of astrophysical transients has been transformed by an exponentially growing volume of data. Within the last decade, the transient discovery rate has increased by a factor of ∼20, with associated survey data, archival data, and metadata also increasing with the number of discoveries. To manage the data at this increased rate, we require new tools. Here we presentYSE-PZ, a transient survey management platform that ingests multiple live streams of transient discovery alerts, identifies the host galaxies of those transients, downloads coincident archival data, and retrieves photometry and spectra from ongoing surveys.YSE-PZalso presents a user with a range of tools to make and support timely and informed transient follow-up decisions. Those subsequent observations enhance transient science and can reveal physics only accessible with rapid follow-up observations. Rather than automating out human interaction,YSE-PZfocuses on accelerating and enhancing human decision making, a role we describe as empowering the human-in-the-loop. Finally,YSE-PZis built to be flexibly used and deployed;YSE-PZcan support multiple, simultaneous, and independent transient collaborations through group-level data permissions, allowing a user to view the data associated with the union of all groups in which they are a member.YSE-PZcan be used as a local instance installed via Docker or deployed as a service hosted in the cloud. We provideYSE-PZas an open-source tool for the community.

     
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    Free, publicly-accessible full text available June 1, 2024
  3. Abstract

    We present the Keck Infrared Transient Survey, a NASA Key Strategic Mission Support program to obtain near-infrared (NIR) spectra of astrophysical transients of all types, and its first data release, consisting of 105 NIR spectra of 50 transients. Such a data set is essential as we enter a new era of IR astronomy with the James Webb Space Telescope (JWST) and the upcoming Nancy Grace Roman Space Telescope (Roman). NIR spectral templates will be essential to search JWST images for stellar explosions of the first stars and to plan an effective Roman SN Ia cosmology survey, both key science objectives for mission success. Between 2022 February and 2023 July, we systematically obtained 274 NIR spectra of 146 astronomical transients, representing a significant increase in the number of available NIR spectra in the literature. Here, we describe the first release of data from the 2022A semester. We systematically observed three samples: a flux-limited sample that includes all transients <17 mag in a red optical band (usually ZTFror ATLASobands); a volume-limited sample including all transients within redshiftz< 0.01 (D≈ 50 Mpc); and an SN Ia sample targeting objects at phases and light-curve parameters that had scant existing NIR data in the literature. The flux-limited sample is 39% complete (60% excluding SNe Ia), while the volume-limited sample is 54% complete and is 79% complete toz= 0.005. Transient classes observed include common Type Ia and core-collapse supernovae, tidal disruption events, luminous red novae, and the newly categorized hydrogen-free/helium-poor interacting Type Icn supernovae. We describe our observing procedures and data reduction usingPypeIt, which requires minimal human interaction to ensure reproducibility.

     
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  4. Musier-Forsyth, Karin (Ed.)
    RNA-binding proteins play crucial roles in various cellular functions, and contain abundant disordered protein regions. The disordered regions in RNA-binding proteins are rich in repetitive sequences, such as poly-K/R, poly-N/Q, poly-A, and poly-G residues. Our bioinformatic analysis identified a largely neglected repetitive sequence family we define as electronegative clusters (ENCs) that contain acidic residues and/or phosphorylation sites. The abundance and length of ENCs exceed other known repetitive sequences. Despite their abundance, the functions of ENCs in RNA-binding proteins are still elusive. To investigate the impacts of ENCs on protein stability, RNA-binding affinity, and specificity, we selected one RNA-binding protein, the ribosomal biogenesis factor 15 (Nop15) as a model. We found that the Nop15 ENC increases protein stability and inhibits nonspecific RNA binding, but minimally interferes with specific RNA binding. To investigate the effect of ENCs on sequence specificity of RNA binding, we grafted an ENC to another RNA-binding protein, Ser/Arg-rich splicing factor 3 (SRSF3). Using RNA Bind-n-Seq, we found that the engineered ENC inhibits disparate RNA motifs differently, instead of weakening all RNA motifs to the same extent. The motif site directly involved in electrostatic interaction is more susceptible to the ENC inhibition. These results suggest that one of functions of ENCs is to regulate RNA binding via electrostatic interaction. This is consistent with our finding that ENCs are also overrepresented in DNA-binding proteins, while underrepresented in halophiles, in which nonspecific nucleic acid binding is inhibited by high concentrations of salts. 
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  5. Abstract We present extensive optical photometry of the afterglow of GRB 221009A. Our data cover 0.9–59.9 days from the time of Swift and Fermi gamma-ray burst (GRB) detections. Photometry in rizy -band filters was collected primarily with Pan-STARRS and supplemented by multiple 1–4 m imaging facilities. We analyzed the Swift X-ray data of the afterglow and found a single decline rate power law f ( t ) ∝ t −1.556±0.002 best describes the light curve. In addition to the high foreground Milky Way dust extinction along this line of sight, the data favor additional extinction to consistently model the optical to X-ray flux with optically thin synchrotron emission. We fit the X-ray-derived power law to the optical light curve and find good agreement with the measured data up to 5−6 days. Thereafter we find a flux excess in the riy bands that peaks in the observer frame at ∼20 days. This excess shares similar light-curve profiles to the Type Ic broad-lined supernovae SN 2016jca and SN 2017iuk once corrected for the GRB redshift of z = 0.151 and arbitrarily scaled. This may be representative of an SN emerging from the declining afterglow. We measure rest-frame absolute peak AB magnitudes of M g = −19.8 ± 0.6 and M r = − 19.4 ± 0.3 and M z = −20.1 ± 0.3. If this is an SN component, then Bayesian modeling of the excess flux would imply explosion parameters of M ej = 7.1 − 1.7 + 2.4 M ⊙ , M Ni = 1.0 − 0.4 + 0.6 M ⊙ , and v ej = 33,900 − 5700 + 5900 km s −1 , for the ejecta mass, nickel mass, and ejecta velocity respectively, inferring an explosion energy of E kin ≃ 2.6–9.0 × 10 52 erg. 
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  6. null (Ed.)
  7. ABSTRACT After correcting for their light-curve shape and colour, Type Ia supernovae (SNe Ia) are precise cosmological distance indicators. However, there remains a non-zero intrinsic scatter in the differences between measured distance and that inferred from a cosmological model (i.e. Hubble residuals or HRs), indicating that SN Ia distances can potentially be further improved. We use the open-source relational data base kaepora to generate composite spectra with desired average properties of phase, light-curve shape, and HR. At many phases, the composite spectra from two subsamples with positive and negative average HRs are significantly different. In particular, in all spectra from 9 d before to 15 d after peak brightness, we find that SNe with negative HRs have, on average, higher ejecta velocities (as seen in nearly every optical spectral feature) than SNe with positive HRs. At +4 d relative to B-band maximum, using a sample of 62 SNe Ia, we measure a 0.091 ± 0.035 mag (2.7σ) HR step between SNe with Si ii λ6355 line velocities ($v_{Si\, rm{\small II}}$) higher/lower than −11 000 km s−1 (the median velocity). After light-curve shape and colour correction, SNe with higher velocities tend to have underestimated distance moduli relative to a cosmological model. The intrinsic scatter in our sample reduces from 0.094 to 0.082 mag after making this correction. Using the Si ii λ6355 velocity evolution of 115 SNe Ia, we estimate that a velocity difference >500 km s−1 exists at each epoch between the positive-HR and negative-HR samples with 99.4 per cent confidence. Finally at epochs later than +37 d, we observe that negative-HR composite spectra tend to have weaker spectral features in comparison to positive-HR composite spectra. 
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  8. Abstract We present the Young Supernova Experiment Data Release 1 (YSE DR1), comprised of processed multicolor PanSTARRS1 griz and Zwicky Transient Facility (ZTF) gr photometry of 1975 transients with host–galaxy associations, redshifts, spectroscopic and/or photometric classifications, and additional data products from 2019 November 24 to 2021 December 20. YSE DR1 spans discoveries and observations from young and fast-rising supernovae (SNe) to transients that persist for over a year, with a redshift distribution reaching z ≈ 0.5. We present relative SN rates from YSE’s magnitude- and volume-limited surveys, which are consistent with previously published values within estimated uncertainties for untargeted surveys. We combine YSE and ZTF data, and create multisurvey SN simulations to train the ParSNIP and SuperRAENN photometric classification algorithms; when validating our ParSNIP classifier on 472 spectroscopically classified YSE DR1 SNe, we achieve 82% accuracy across three SN classes (SNe Ia, II, Ib/Ic) and 90% accuracy across two SN classes (SNe Ia, core-collapse SNe). Our classifier performs particularly well on SNe Ia, with high (>90%) individual completeness and purity, which will help build an anchor photometric SNe Ia sample for cosmology. We then use our photometric classifier to characterize our photometric sample of 1483 SNe, labeling 1048 (∼71%) SNe Ia, 339 (∼23%) SNe II, and 96 (∼6%) SNe Ib/Ic. YSE DR1 provides a training ground for building discovery, anomaly detection, and classification algorithms, performing cosmological analyses, understanding the nature of red and rare transients, exploring tidal disruption events and nuclear variability, and preparing for the forthcoming Vera C. Rubin Observatory Legacy Survey of Space and Time. 
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    Free, publicly-accessible full text available May 1, 2024
  9. We present photometric and spectroscopic data on three extragalactic luminous red novae (LRNe): AT 2018bwo , AT 2021afy , and AT 2021blu . AT 2018bwo was discovered in NGC 45 (at about 6.8 Mpc) a few weeks after the outburst onset. During the monitoring period, the transient reached a peak luminosity of 10 40 erg s −1 . AT 2021afy , hosted by UGC 10043 (∼49.2 Mpc), showed a double-peaked light curve, with the two peaks reaching a similar luminosity of 2.1(±0.6)×10 41 erg s −1 . Finally, for AT 2021blu in UGC 5829 (∼8.6 Mpc), the pre-outburst phase was well-monitored by several photometric surveys, and the object showed a slow luminosity rise before the outburst. The light curve of AT 2021blu was sampled with an unprecedented cadence until the object disappeared behind the Sun, and it was then recovered at late phases. The light curve of LRN AT 2021blu shows a double peak, with a prominent early maximum reaching a luminosity of 6.5 × 10 40 erg s −1 , which is half of that of AT 2021afy . The spectra of AT 2021afy and AT 2021blu display the expected evolution for LRNe: a blue continuum dominated by prominent Balmer lines in emission during the first peak, and a redder continuum consistent with that of a K-type star with narrow absorption metal lines during the second, broad maximum. The spectra of AT 2018bwo are markedly different, with a very red continuum dominated by broad molecular features in absorption. As these spectra closely resemble those of LRNe after the second peak, AT 2018bwo was probably discovered at the very late evolutionary stages. This would explain its fast evolution and the spectral properties compatible with that of an M-type star. From the analysis of deep frames of the LRN sites years before the outburst, and considerations of the light curves, the quiescent progenitor systems of the three LRNe were likely massive, with primaries ranging from about 13 M ⊙ for AT 2018bwo , to 14 −1 +4 M ⊙ for AT 2021blu , and over 40 M ⊙ for AT 2021afy . 
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  10. Abstract We present panchromatic observations and modeling of calcium-strong supernovae (SNe) 2021gno in the star-forming host-galaxy NGC 4165 and 2021inl in the outskirts of elliptical galaxy NGC 4923, both monitored through the Young Supernova Experiment transient survey. The light curves of both, SNe show two peaks, the former peak being derived from shock cooling emission (SCE) and/or shock interaction with circumstellar material (CSM). The primary peak in SN 2021gno is coincident with luminous, rapidly decaying X-ray emission ( L x = 5 × 10 41 erg s −1 ) detected by Swift-XRT at δ t = 1 day after explosion, this observation being the second-ever detection of X-rays from a calcium-strong transient. We interpret the X-ray emission in the context of shock interaction with CSM that extends to r < 3 × 10 14 cm. Based on X-ray modeling, we calculate a CSM mass M CSM = (0.3−1.6) × 10 −3 M ⊙ and density n = (1−4) × 10 10 cm −3 . Radio nondetections indicate a low-density environment at larger radii ( r > 10 16 cm) and mass-loss rate of M ̇ < 10 − 4 M ⊙ yr −1 . SCE modeling of both primary light-curve peaks indicates an extended-progenitor envelope mass M e = 0.02−0.05 M ⊙ and radius R e = 30−230 R ⊙ . The explosion properties suggest progenitor systems containing either a low-mass massive star or a white dwarf (WD), the former being unlikely given the lack of local star formation. Furthermore, the environments of both SNe are consistent with low-mass hybrid He/C/O WD + C/O WD mergers. 
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