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  1. The tools and techniques such as imaging and machine learning used in the measurement of many material and microstructural properties are rapidly evolving. In metals, the grain size is routinely measured to estimate the yield strength. This paper describes some of the algorithms used in processing the microstructures to conduct quantitative measurements. The image processing methods provide the possibility to go beyond calculating the ASTM grain size number and calculate the actual surface area of each grain, grain boundary length, and the shape of the grains. The image analysis methods can be very helpful in conducting detailed quantitative analysis with greater accuracy than many labour-intensive manual methods currently in use. The work describes the complexities in applying the imaging methods and approaches in the metallurgical and materials fields. Successful application of such methods can reduce the time and effort required to characterise microstructures and can provide more precise information. 
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    Free, publicly-accessible full text available March 1, 2025
  2. Abstract

    Coastal ecosystems have been largely ignored in Earth system models but are important zones for carbon and nutrient processing. Interactions between water, microbes, soil, sediments, and vegetation are important for mechanistic representation of coastal processes and ecosystem function. To investigate the role of these feedbacks, we used a reactive transport model (PFLOTRAN) that has the capability to be connected to the Energy Exascale Earth System Model (E3SM). PFLOTRAN was used to incorporate redox reactions and track chemical species important for coastal ecosystems as well as define simple representations of vegetation dynamics. Our goal was to incorporate oxygen flux, salinity, pH, sulfur cycling, and methane production along with plant‐mediated transport of gases and tidal flux. Using porewater profile and incubation data for model calibration and evaluation, we were able to create depth‐resolved biogeochemical soil profiles for saltmarsh habitat and use this updated representation to simulate direct and indirect effects of elevated CO2and temperature on subsurface biogeochemical cycling. We found that simply changing the partial pressure of CO2or increasing temperature in the model did not fully reproduce observed changes in the porewater profile, but the inclusion of plant or microbial responses to CO2and temperature manipulations was more accurate in representing porewater concentrations. This indicates the importance of characterizing tightly coupled vegetation‐subsurface processes for developing predictive understanding and the need for measurement of plant‐soil interactions on the same time scale to understand how hotspots or moments are generated.

     
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  3. Trapped-ion quantum information processing may benefit from qubits encoded in isotopes that are practically available in only small quantities, e.g., due to low natural abundance or radioactivity. Laser ablation provides a method of controllably liberating neutral atoms or ions from low-volume targets, but energetic ablation products can be difficult to confine in the small ion-electrode distance, micron-scale microfabricated traps amenable to high-speed, high-fidelity manipulation of ion arrays. Here, we investigate ablation-based ion loading into surface-electrode traps of different sizes to test a model describing ion loading probability as a function of effective trap volume and other trap parameters. We characterize loading of ablated barium from a metallic source in two cryogenic surface-electrode traps with 730 and 50 μm ion-electrode distances. Our loading rate agrees with a predictive analytical model, providing insight for the confinement of limited-quantity species of interest for quantum computing, simulation, and sensing.

     
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    Free, publicly-accessible full text available June 26, 2024
  4. —Robots often have to perform manipulation tasks in close proximity to people (Fig 1). As such, it is desirable to use a robot arm that has limited joint torques so as to not injure the nearby person. Unfortunately, these limited torques then limit the payload capability of the arm. By using contact with the environment, robots can expand their reachable workspace that, otherwise, would be inaccessible due to exceeding actuator torque limits. We adapt our recently developed INSAT algorithm [1] to tackle the problem of torque-limited whole arm manipulation planning through contact. INSAT requires no prior over contact mode sequence and no initial template or seed for trajectory optimization. INSAT achieves this by interleaving graph search to explore the manipulator joint configuration space with incre- mental trajectory optimizations seeded by neighborhood solutions to find a dynamically feasible trajectory through contact. We demonstrate our results on a variety of manipulators and scenarios in simulation. We also experimentally show our planner exploiting robot-environment contact for the pick and place of a payload using a Kinova Gen3 robot. In comparison to the same trajectory running in free space, we experimentally show that the utilization of bracing contacts reduces the overall torque required to execute the trajectory. 
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    Free, publicly-accessible full text available May 11, 2024
  5. Abstract

    Centaurs are minor solar system bodies with orbits transitioning between those of trans-Neptunian scattered disk objects and Jupiter-family comets (JFCs). 39P/Oterma (39P) is a frequently active centaur that has recently held both centaur and JFC classifications and was observed with the JWST NIRSpec instrument on 2022 July 27 UTC while it was 5.82 au from the Sun. For the first time, CO2gas emission was detected in a centaur, with a production rate ofQCO2= (5.96 ± 0.80) × 1023molecules s−1. This is the lowest detection of CO2of any centaur or comet. CO and H2O were not detected down to constraining upper limits. Derived mixing ratios ofQCO/QCO2≤ 2.03 andQCO2/QH2O≥ 0.60 are consistent with CO2and/or CO outgassing playing large roles in driving the activity, but not water, and show a significant difference between the coma abundances of 29P/Schwassmann–Wachmann 1, another centaur at a similar heliocentric distance, which may be explained by thermal processing of 39P’s surface during its previous JFC orbit. To help contextualize the JWST data we also acquired visible CCD imaging data on two dates in 2022 July (Gemini-North) and September (Lowell Discovery Telescope). Image analysis and photometry based on these data are consistent with a point-source detection and an estimated effective nucleus radius of 39P in the range ofRnuc= 2.21–2.49 km.

     
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  6. Abstract

    The carbon dioxide (CO2) fluxes from headwater streams are not well quantified and could be a source of significant carbon, particularly in systems underlain by carbonate lithology. Also, the sensitivity of carbonate systems to changes in temperature will make these fluxes even more significant as climate changes. This study quantifies small-scale CO2 efflux and estimates annual CO2 emission from a headwater stream at the Konza Prairie Long-Term Ecological Research Site and Biological Station (Konza), in a complex terrain of horizontal, alternating limestones and shales with small-scale karst features. CO2 effluxes ranged from 2.2 to 214 g CO2 m−2 day−1 (mean: 20.9 CO2 m−2 day−1). Downstream of point groundwater discharge sources, CO2 efflux decreased, over 2 m, to 3–40% of the point-source flux, while δ13C-CO2 increased, ranging from −9.8 ‰ to −23.2 ‰ V-PDB. The δ13C-CO2 increase was not strictly proportional to the CO2 flux but related to the origin of vadose zone CO2. The high spatial and temporal variability of CO2 efflux from this headwater stream informs those doing similar measurements and those working on upscaling stream data, that local variability should be assessed to estimate the impact of headwater stream CO2 efflux on the global carbon cycle.

     
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  7. Thinking about possibilities plays a critical role in the choices humans make throughout their lives. Despite this, the influence of individuals' ability to consider what is possible on culture has been largely overlooked. We propose that the ability to reason about future possibilities or prospective cognition, has consequences for cultural change, possibly facilitating the process of cumulative cultural evolution. In particular, by considering potential future costs and benefits of specific behaviours, prospective cognition may lead to a more flexible use of cultural behaviours. In species with limited planning abilities, this may lead to the development of cultures that promote behaviours with future benefits, circumventing this limitation. Here, we examine these ideas from a comparative perspective, considering the relationship between human and nonhuman assessments of future possibilities and their cultural capacity to invent new solutions and improve them over time. Given the methodological difficulties of assessing prospective cognition across species, we focus on planning, for which we have the most data in other species. Elucidating the role of prospective cognition in culture will help us understand the variability in when and how we see culture expressed, informing ongoing debates, such as that surrounding which social learning mechanisms underlie culture. This article is part of the theme issue ‘Thinking about possibilities: mechanisms, ontogeny, functions and phylogeny’. 
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  8. Dusty plasmas are electrically quasi-neutral media that, along with electrons, ions, neutral gas, radiation, and electric and/or magnetic fields, also contain solid or liquid particles with sizes ranging from a few nanometers to a few micrometers. These media can be found in many natural environments as well as in various laboratory setups and industrial applications. As a separate branch of plasma physics, the field of dusty plasma physics was born in the beginning of 1990s at the intersection of the interests of the communities investigating astrophysical and technological plasmas. An additional boost to the development of the field was given by the discovery of plasma crystals leading to a series of microgravity experiments of which the purpose was to investigate generic phenomena in condensed matter physics using strongly coupled complex (dusty) plasmas as model systems. Finally, the field has gained an increasing amount of attention due to its inevitable connection to the development of novel applications ranging from the synthesis of functional nanoparticles to nuclear fusion and from particle sensing and diagnostics to nano-contamination control. The purpose of the present perspectives paper is to identify promising new developments and research directions for the field. As such, dusty plasmas are considered in their entire variety: from classical low-pressure noble-gas dusty discharges to atmospheric pressure plasmas with aerosols and from rarefied astrophysical plasmas to dense plasmas in nuclear fusion devices. Both fundamental and application aspects are covered.

     
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    Free, publicly-accessible full text available December 1, 2024
  9. Abstract

    Whole mitochondrial genomes are often used in phylogenetic reconstruction. However, discordant patterns in species relationships between mitochondrial and nuclear phylogenies are commonly observed. Within Anthozoa (Phylum Cnidaria), mitochondrial (mt)-nuclear discordance has not yet been examined using a large and comparable dataset. Here, we used data obtained from target-capture enrichment sequencing to assemble and annotate mt genomes and reconstruct phylogenies for comparisons to phylogenies inferred from hundreds of nuclear loci obtained from the same samples. The datasets comprised 108 hexacorals and 94 octocorals representing all orders and > 50% of extant families. Results indicated rampant discordance between datasets at every taxonomic level. This discordance is not attributable to substitution saturation, but rather likely caused by introgressive hybridization and unique properties of mt genomes, including slow rates of evolution driven by strong purifying selection and substitution rate variation. Strong purifying selection across the mt genomes caution their use in analyses that rely on assumptions of neutrality. Furthermore, unique properties of the mt genomes were noted, including genome rearrangements and the presence ofnad5introns. Specifically, we note the presence of the homing endonuclease in ceriantharians. This large dataset of mitochondrial genomes further demonstrates the utility of off-target reads generated from target-capture data for mt genome assembly and adds to the growing knowledge of anthozoan evolution.

     
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  10. Free, publicly-accessible full text available August 21, 2024