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Flexible and stretchable electronics are a logical choice for the recording of biopotentials, due to their improved patient comfort and customizability. There is, however, significant variance in the signal quality received from these electrodes based on material, size, and target recording frequency. Here we develop a methodology based on Electrochemical Impedance Spectroscopy (EIS) and circuit modeling for optimizing electrodes for a specific application. We use EIS to measure the frequency dependent impedance characteristics of gold (Au) and silver/silver chloride (Ag/AgCl) electrodes of different diameters. Additionally, we use a Randles circuit model and perform model fitting with our data to extrapolate results to arbitrary frequencies and diameters. We found that at low frequencies (<1 Hz), Ag/AgCl had lower overall magnitude impedance than Au and at higher frequencies (1–1000 Hz), Au and Ag/AgCl performed similarly. Further, the magnitude impedance of the electrodes decreased linearly as electrode diameter increased. The methodology described in this study can be applicable to any customizable stretchable electronics fabrication process and enables design optimization for a target frequency, electrode size, and material.