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  1. Abstract

    Growing concerns about the global antimicrobial resistance crisis require a better understanding of how antibiotic resistance persists in soil and how antibiotic exposure impacts soil microbial communities. In agroecosystems, these responses are complex because environmental factors may influence how soil microbial communities respond to manure and antibiotic exposure. The study aimed to determine how soil type and moisture alter responses of microbial communities to additions of manure from cattle treated with antibiotics. Soil microcosms were constructed using two soil types at 15, 30, or 45% moisture. Microcosms received biweekly additions of manure from cattle given cephapirin or pirlimycin, antibiotic-free manure, or no manure. While soil type and moisture had the largest effects on microbiome structure, impacts of manure treatments on community structure and individual ARG abundances were observed across varying soil conditions. Activity was also affected, as respiration increased in the cephapirin treatment but decreased with pirlimycin. Manure from cattle antibiotics also increased NH4+and decreased NO3availability in some scenarios, but the effects were heavily influenced by soil type and moisture. Overall, this work demonstrates that environmental conditions can alter how manure from cattle administered antibiotics impact the soil microbiome. A nuanced approach that considers environmental variability may benefit the long-term management of antibiotic resistance in soil systems.

     
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  2. Free, publicly-accessible full text available February 1, 2025
  3. Abstract

    Synthetic studies of arthropod systematics and biodiversity are hindered by overreliance on ‘preferred’ semaphoronts, those life stages (typically adult males) that provide the most taxonomically distinctive characters. However, modern sequence‐based methods for inventory have no such limitations and permit incorporation of any and all representatives of a species. Here, we briefly review the growth and potential of these approaches to faunistic and systematic studies and share results from our own recent work that illustrate the value that other morphs, immature stages and females added to these studies.

     
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    Free, publicly-accessible full text available January 31, 2025
  4. Abstract

    Knitting turns yarn, a 1D material, into a 2D fabric that is flexible, durable, and can be patterned to adopt a wide range of 3D geometries. Like other mechanical metamaterials, the elasticity of knitted fabrics is an emergent property of the local stitch topology and pattern that cannot solely be attributed to the yarn itself. Thus, knitting can be viewed as an additive manufacturing technique that allows for stitch-by-stitch programming of elastic properties and has applications in many fields ranging from soft robotics and wearable electronics to engineered tissue and architected materials. However, predicting these mechanical properties based on the stitch type remains elusive. Here we untangle the relationship between changes in stitch topology and emergent elasticity in several types of knitted fabrics. We combine experiment and simulation to construct a constitutive model for the nonlinear bulk response of these fabrics. This model serves as a basis for composite fabrics with bespoke mechanical properties, which crucially do not depend on the constituent yarn.

     
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  5. Dipara trilineata (Diparidae) is a widespread eastern North American parasitoid with apterous females and winged males. Despite its seemingly limited dispersal capabilities, phylogeographic analysis over southern Appalachia reveals little structure, with only limited population level isolation. DNA barcoding surveys also definitively associate the male of the species, which had previously been misattributed, and a description of the correctly associated male is provided. 
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    Free, publicly-accessible full text available December 19, 2024
  6. Medon icarus Caterino, new species (Staphylinidae: Paederinae) is described, restricted largely to the highest elevations of the southern Appalachian Mountains, USA. This flightless species occurs across several high ranges in the region, and analysis of COI sequences from known populations reveals deep genetic divergences among them. Insufficient morphological differentiation has been observed to subdivide them, but the possibility remains that this represents a cryptic species complex, with from 5–12 genetically but otherwise indistinguishable members. This is the only member of this mainly western Nearctic and Palearctic genus in the southeastern US, though it appears to be closely related to the northeastern winged species Medon americanus Casey. Description of DNA-associated larval specimens, along with adult morphological and molecular information, will help determine its position among global Medonina diversity. 
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    Free, publicly-accessible full text available December 1, 2024
  7. Abstract

    A key component of the phase diagram of many iron-based superconductors and electron-doped cuprates is believed to be a quantum critical point (QCP), delineating the onset of antiferromagnetic spin-density wave order in a quasi-two-dimensional metal. The universality class of this QCP is believed to play a fundamental role in the description of the proximate non-Fermi liquid behavior and superconducting phase. A minimal model for this transition is the O(3) spin-fermion model. Despite many efforts, a definitive characterization of its universal properties is still lacking. Here, we numerically study the O(3) spin-fermion model and extract the scaling exponents and functional form of the static and zero-momentum dynamical spin susceptibility. We do this using a Hybrid Monte Carlo (HMC) algorithm with a novel auto-tuning procedure, which allows us to study unprecedentedly large systems of 80 × 80 sites. We find a strong violation of the Hertz-Millis form, contrary to all previous numerical results. Furthermore, the form that we do observe provides good evidence that the universal scaling is actually governed by the analytically tractable fixed point discovered near perfect “hot-spot’ nesting, even for a larger nesting window. Our predictions can be directly tested with neutron scattering. Additionally, the HMC method we introduce is generic and can be used to study other fermionic models of quantum criticality, where there is a strong need to simulate large systems.

     
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    Free, publicly-accessible full text available December 1, 2024
  8. HorologionValentine, one of the rarest and most enigmatic carabid beetle genera in the world, was until now known only from the holotype ofHorologion speokoitesValentine, discovered in 1931 in a small cave in West Virginia. A single specimen of a new species from Virginia was collected in 1991, but overlooked until 2018. DNA sequence data from specimens of this new species,Horologion hubbardisp. nov., collected in 2022 and 2023, as well as a critical examination of the external morphology of both species, allow us to confidently placeHorologionin the supertribe Trechitae, within a clade containing Bembidarenini and Trechini. A more specific placement as sister to the Gondwanan Bembidarenini is supported by DNA sequence data. Previous hypotheses placingHorologionin or near the tribes Anillini, Tachyini, Trechini, Patrobini, and Psydrini are rejected. The existence of two species ofHorologionon opposite sides of the high mountains of the middle Appalachians suggests that these mountains are where the ancestralHorologionpopulations dispersed from, and predicts the discovery of additional populations and species. All specimens ofH. hubbardiwere collected in or near drip pools, and most were found dead, suggesting that the terrestrial epikarst, rather than caves, is the true habitat ofHorologion, which explains their extreme rarity since epikarst has not been directly sampled. We recognize the tribe Horologionini, a relict lineage without any close relatives known in the Northern Hemisphere, and an important part of Appalachian biodiversity.

     
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    Free, publicly-accessible full text available January 8, 2025
  9. Abstract

    The sacred datura plant (Solanales: Solanaceae:Datura wrightii) has been used to study plant–herbivore interactions for decades. The wealth of information that has resulted leads it to have potential as a model system for studying the ecological and evolutionary genomics of these interactions. We present a de novoDatura wrightiigenome assembled using PacBio HiFi long-reads. Our assembly is highly complete and contiguous (N50 = 179Mb, BUSCO Complete = 97.6%). We successfully detected a previously documented ancient whole genome duplication using our assembly and have classified the gene duplication history that generated its coding sequence content. We use it as the basis for a genome-guided differential expression analysis to identify the induced responses of this plant to one of its specialized herbivores (Coleoptera: Chrysomelidae:Lema daturaphila). We find over 3000 differentially expressed genes associated with herbivory and that elevated expression levels of over 200 genes last for several days. We also combined our analyses to determine the role that different gene duplication categories have played in the evolution ofDatura-herbivore interactions. We find that tandem duplications have expanded multiple functional groups of herbivore responsive genes with defensive functions, including UGT-glycosyltranserases, oxidoreductase enzymes, and peptidase inhibitors. Overall, our results expand our knowledge of herbivore-induced plant transcriptional responses and the evolutionary history of the underlying herbivore-response genes.

     
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  10. Abstract

    We present SCUBA-2/POL-2 850μm polarimetric observations of the circumstellar envelope (CSE) of the carbon-rich asymptotic giant branch (AGB) star IRC+10216. Both far-IR (FIR) and optical polarization data indicate grains aligned with their long axis in the radial direction relative to the central star. The 850μm polarization does not show this simple structure. The 850μm data are indicative, albeit not conclusive, of a magnetic dipole geometry. Assuming such a simple dipole geometry, the resulting 850μm polarization geometry is consistent with both Zeeman observations and small-scale structure in the CSE. While there is significant spectral-line polarization contained within the SCUBA-2 850μm passband for the source, it is unlikely that our broadband polarization results are dominated by line polarization. To explain the required grain alignment, grain mineralogy effects, due to either fossil silicate grains from the earlier oxygen-rich AGB phase of the star or due to the incorporation of ferromagnetic inclusions in the largest grains, may play a role. We argue that the most likely explanation is due to a new alignment mechanism wherein a charged grain, moving relative to the magnetic field, precesses around the induced electric field and therefore aligns with the magnetic field. This mechanism is particularly attractive as the optical, FIR, and submillimeter-wave polarization of the carbon dust can then be explained in a consistent way, differing simply due to the charge state of the grains.

     
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