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We simulate a black hole accretion disk system with full-transport general relativistic neutrino radiation magnetohydrodynamics for 1.2 s. This system is likely to form after the merger of two compact objects and is thought to be a robust site ofr-process nucleosynthesis. We consider the case of a black hole accretion disk arising from the merger of two neutron stars. Our simulation time coincides with the nucleosynthesis timescale of ther-process (∼1 s). Because these simulations are time-consuming, it is common practice to run for a “short” duration of approximately 0.1–0.3 s. We analyze the nucleosynthetic outflow from this system and compare the results of stopping at 0.12 and 1.2 s. We find that the addition of mass ejected in the longer simulation as well as more favorable thermodynamic conditions from emergent viscous ejecta greatly impacts the nucleosynthetic outcome. We quantify the error in nucleosynthetic outcomes between short and long cuts.

 

Single-cell genomics technologies are ushering in a new research era. In this review, we summarize the benefits and current challenges of using these technologies to probe the transcriptional regulation of plant development. In addition to profiling cells at a single snapshot in time, researchers have recently produced time-resolved datasets to map cell responses to stimuli. Live-imaging and spatial transcriptomic techniques are rapidly being adopted to link a cell's transcriptional profile with its spatial location within a tissue. Combining these technologies is a powerful spatiotemporal approach to investigate cell plasticity and developmental responses that contribute to plant resilience. Although there are hurdles to overcome, we conclude by discussing how single-cell genomics is poised to address developmental questions in the coming years. 

Kilonovae, one source of electromagnetic emission associated with neutron star mergers, are powered by the decay of radioactive isotopes in the neutron-rich merger ejecta. Models for kilonova emission consistent with the electromagnetic counterpart to GW170817 predict characteristic abundance patterns, determined by the relative balance of different types of material in the outflow. Assuming that the observed source is prototypical, this inferred abundance pattern in turn must matchr-process abundances deduced by other means, such as what is observed in the solar system. We report on analysis comparing the input mass-weighted elemental compositions adopted in our radiative transfer simulations to the mass fractions of elements in the Sun, as a practical prototype for the potentially universal abundance signature from neutron star mergers. We characterize the extent to which our parameter inference results depend on our assumed composition for the dynamical and wind ejecta and examine how the new results compare to previous work. We find that a dynamical ejecta composition calculated using the FRDM2012 nuclear mass and FRLDM fission models with extremely neutron-rich ejecta (Y_e= 0.035) along with moderately neutron-rich (Y_e= 0.27) wind ejecta composition yields a wind-to-dynamical mass ratio ofM_w/M_d= 0.47, which best matches the observed AT2017gfo kilonova light curves while also producing the best-matching abundance of neutron capture elements in the solar system, though, allowing for systematics, the ratio may be as high as of order unity.

 

As LIGO-Virgo-KAGRA enters its fourth observing run, a new opportunity to search for electromagnetic counterparts of compact object mergers will also begin. The light curves and spectra from the first “kilonova” associated with a binary neutron star merger (NSM) suggests that these sites are hosts of the rapid neutron capture (“r”) process. However, it is unknown just how robust elemental production can be in mergers. Identifying signposts of the production of particular nuclei is critical for fully understanding merger-driven heavy-element synthesis. In this study, we investigate the properties of very neutron-rich nuclei for which superheavy elements (Z≥ 104) can be produced in NSMs and whether they can similarly imprint a unique signature on kilonova light-curve evolution. A superheavy-element signature in kilonovae represents a route to establishing a lower limit on heavy-element production in NSMs as well as possibly being the first evidence of superheavy-element synthesis in nature. Favorable NSM conditions yield a mass fraction of superheavy elementsX_Z≥104≈ 3 × 10⁻²at 7.5 hr post-merger. With this mass fraction of superheavy elements, we find that the component of kilonova light curves possibly containing superheavy elements may appear similar to those arising from lanthanide-poor ejecta. Therefore, photometric characterizations of superheavy-element rich kilonova may possibly misidentify them as lanthanide-poor events.

 

Brassinosteroids (BRs) are steroidal phytohormones that are essential for plant growth, development and adaptation to environmental stresses. BRs act in a dose-dependent manner and do not travel over long distances; hence, BR homeostasis maintenance is critical for their function. Biosynthesis of bioactive BRs relies on the cell-to-cell movement of hormone precursors. However, the mechanism of the short-distance BR transport is unknown, and its contribution to the control of endogenous BR levels remains unexplored. Here we demonstrate that plasmodesmata (PD) mediate the passage of BRs between neighboring cells. Intracellular BR content, in turn, is capable of modulating PD permeability to optimize its own mobility, thereby manipulating BR biosynthesis and signaling. Our work uncovers a thus far unknown mode of steroid transport in eukaryotes and exposes an additional layer of BR homeostasis regulation in plants. 

We describe a protocol to perform fast and non-arbitrary quality control of single-cell RNA sequencing (scRNA-seq) raw data using scKB and COPILOT. scKB is a wrapper script of kallisto and bustools for accelerated alignment and transcript count matrix generation, which runs significantly faster than the popular tool Cell Ranger. COPILOT then offers non-arbitrary background noise removal by comparing distributions of low-quality and high-quality cells. Together, this protocol streamlines the processing workflow and provides an easy entry for new scRNA-seq users. For complete details on the use and execution of this protocol, please refer to Shahan et al. (2022).