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The Upper Clark Fork River (UCFR), Montana, a mid-order well-lit system with contemporary anthropogenic nitrogen (N) enrichment and natural geogenic sources of phosphorus (P), experiences annual algal blooms that influence ecosystem structure and function. This study was designed to assess the occurrence of riverine algal blooms (RABs) in the UCFR by characterizing the succession of periphyton and biogeochemical conditions following annual snowmelt runoff through autumnal baseflow conditions, and to provide a framework for assessing RAB progression in montane mid-order rivers more broadly. Using a 21-year database (2000–2020) collected over the growing season at three sites, historical assessment of the persistent and recurrent character of RABs in the UCFR showed that the magnitude of the summer bloom was, in part, moderated by snowmelt disturbance. Abundance and growth forms of benthic algae, along with river physicochemistry (e.g., temperature) and water chemistry (N and P concentration), were measured over the course of snowmelt recession for three years (2018–2020) at the same three sites. Results documented the onset of major blooms of the filamentous green algaeCladophoraacross all sites, commensurate with declines in dissolved inorganic N. Atomic N:P ratios of river water suggest successional transitions from P- to N-limitation associated with mid-season senescence ofCladophoraand development of a secondary bloom of N-fixing cyanobacteria, dominated byNostoc cf. pruniforme. Rates of N-fixation, addressed at one of the sites during the 2020 snowmelt recession, increased uponCladophorasenescence to a maximal value among the highest reported for lotic systems (5.80 mg N/m²/h) before decreasing again to background levels at the end of the growing season. Based on these data, a heuristic model for mid-order rivers responding to snowmelt disturbance suggests progression from phases of physical stress (snowmelt) to optimal growth conditions, to conditions of biotic stress later in the growing season. Optimal growth is observed as green algal blooms that form shortly after peak snowmelt, then transition to stages dominated by cyanobacteria and autochthonous N production later in the growing season. Accordingly, interactions among algal composition, reactive N abundance, and autochthonous N production, suggest successional progression from reliance on external nutrient sources to increased importance of autochthony, including N-fixation that sustains riverine productivity during late stages of snowmelt recession.

 

Harmful and nuisance algal blooms are becoming a greater concern to public health, riverine ecosystems, and recreational uses of inland waterways. Algal bloom proliferation has increased in the Upper Clark Fork River due to a combination of warming water temperatures, naturally high phosphorus levels, and an influx of nitrogen from various sources. To improve understanding of bloom dynamics and how they affect water quality, often measured as algal biomass measured through pigment standing crops, a UAV-based hyperspectral imaging system was deployed to monitor several locations along the Upper Clark Fork River in western Montana. Image data were collected across the spectral range of 400–1000 nm with 2.1 nm spectral resolution during two field sampling campaigns in 2021. Included are methods to estimate chl a and phycocyanin standing crops using regression analysis of salient wavelength bands, before and after separating the pigments according to their growth form. Estimates of chl a and phycocyanin standing crops generated through a linear regression analysis are compared to in situ data, resulting in a maximum R2 of 0.96 for estimating fila/epip chl-a and 0.94 when estimating epiphytic phycocyanin. Estimates of pigment standing crops from total abundance, epiphytic, and the sum of filamentous and epiphytic sources are also included, resulting in a promising method for remotely estimating algal standing crops. This method addresses the shortcomings of current monitoring techniques, which are limited in spatial and temporal scale, by proposing a method for rapid collection of high-spatial-resolution pigment abundance estimates. 

Estimates of primary productivity in aquatic ecosystems are commonly based on variation in , rather than . The photosynthetic quotient (PQ) is used to convert primary production estimates from units of to C. However, there is a mismatch between the theory and application of the PQ. Aquatic ecologists use PQ = 1–1.4. Meanwhile, PQ estimates from the literature support PQ = 0.1–4.2. Here, we describe the theory on why PQ may vary in aquatic ecosystems. We synthesize the current understanding of how processes such as assimilation and photorespiration can affect the PQ. We test these ideas with a case study of the Clark Fork River, Montana, where theory predicts that PQ could vary in space and time due to variation in environmental conditions. Finally, we highlight research needs to improve our understanding of the PQ. We suggest departing from fixed PQ values and instead use literature‐based sensitivity analyses to infer C dynamics from primary production estimated using .

 

Riverine floodplains exhibit high floral and faunal diversity as a consequence of their biophysical complexity. Extension of such niche partitioning processes to microbial communities is far less resolved or supported. Here, we evaluated the responses of aquatic biofilms diversity to environmental gradients across ten riverine floodplains with differing degrees of flow alteration and habitat diversity to assess whether complex floodplains support biofilm communities with greater biodiversity and species interactions. No significant evidence was found to support a central role for habitat diversity in promoting microbial diversity across 116 samples derived from 62 aquatic habitats, as neither α (H’: 2.8–4.1) nor β (Sørensen: 0.3–0.39) diversity were positively related to floodplain complexity across the ten floodplains. In contrast, our results documented the sensitivity of biofilm communities to regional templates manifested as gradients of carbon, nitrogen, and phosphorous availability. Large-scale conditions reflecting nitrogen limitation increased the relative abundance of N-fixing cyanobacteria (up to 0.34 as fraction of total reads), constrained the total number of interactions among bacterial taxa, and reinforced negative over positive interactions, generating unique microbial communities and networks that reflect large-scale species sorting in response to regional geochemical gradients.

 

Channel reconfiguration is one of the most common and costly stream restoration techniques, though its effectiveness is frequently questioned. Project monitoring often tracks changes in macroinvertebrate communities and other responses for a 5‐year period. However, channel reconfiguration is a documented disturbance to stream ecosystems, suggesting that this form of restoration initiates succession over longer time frames than monitoring typically captures. To address the role of succession in stream ecosystem recovery, we developed the Phased Recovery Framework (PRF) which proposes benchmarks represented by predictable habitat structure and community composition based on project age. The PRF was tested across nine stream restoration projects in western Montana, ranging in age from 1 to 18 years, each paired with an established reference system. We tested for differences in channel form, habitat character, and macroinvertebrate community composition. While restoration established desired channel form, most biotic variables had not recovered to reference condition even for the oldest projects. Across all sites, phases of the PRF were poor predictors of response. However, analyzing responses to reconfiguration independently for sites in watersheds with unimpaired water quality versus those experiencing excessive nutrient enrichment (i.e. impaired sites) indicated that biological variables converged on reference conditions at unimpaired sites, but diverged across impaired reaches. These large‐scale anthropogenic influences may play a stronger role in recovery than do changes to channel form and need to be incorporated into project design and success criteria. Assessment of the PRF suggests that short‐term monitoring is not likely to produce reliable indicators of effectiveness without incorporating locally appropriate change associated with watershed impairment and successional progression.