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Thermospheric mass density perturbations are commonly observed during geomagnetic storms and fundamental to upper atmosphere dynamics, but the sources of these perturbations are not well understood. Large neutral density perturbations during storms greatly affect the drag experienced by low Earth orbit. We investigated the thermospheric density perturbations at all latitudes observed along the CHAMP and GRACE satellite trajectories during the August 24–25, 2005 geomagnetic storm. Observations show that large neutral density enhancements occurred not only at high latitudes, but also globally. Large density perturbations were seen in the equatorial regions away from the high‐latitude, magnetospheric energy sources. We used the high‐resolution Multiscale Atmosphere Geospace Environment (MAGE) model to simulate consecutive neutral density changes observed by satellites during the storm. The MAGE simulation, which resolved mesoscale high‐latitude convection electric fields and field‐aligned currents, and included physics‐based specification of auroral precipitation, was contrasted with a standalone ionosphere‐thermosphere simulation driven by a high‐latitude electrodynamics empirical model. The comparison demonstrates that first‐principles representations of highly dynamic and localized Joule heating events in a fully coupled whole geospace model is critical to accurately capture both generation and propagation of traveling atmospheric disturbances (TADs) that produce neutral density perturbations globally. The MAGE simulation shows that larger density peaks in the equatorial region observed by CHAMP and GRACE are the result of TADs generated at high‐latitudes in both hemispheres, and intersect at low‐latitudes. This study reveals the importance of investigating thermospheric density variations at all latitudes in a fully coupled geospace model with sufficiently high resolving power.

Explosive magnetotail activity has long been understood in the context of its auroral manifestations. While global models have been used to interpret and understand many magnetospheric processes, the temporal and spatial scales of some auroral forms have been inaccessible to global modeling creating a gulf between observational and theoretical studies of these phenomena. We present here an important step toward bridging this gulf using a newly developed global magnetosphere‐ionosphere model with resolution capturing30 km azimuthal scales in the auroral zone. In a global magnetohydrodynamic (MHD) simulation of the growth phase of a synthetic substorm, we find the self‐consistent formation and destabilization of localized magnetic field minima in the near‐Earth magnetotail. We demonstrate that this destabilization is due to ballooning‐interchange instability which drives earthward entropy bubbles with embedded magnetic fronts. Finally, we show that these bubbles create localized field‐aligned current structures that manifest in the ionosphere with properties matching observed auroral beads.