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Amino acids are the basic “building blocks” of peptides and proteins and play important roles in the physiological processes of all species. In this study, we simulated the Raman spectrum of Glycine, Tyrosine and Phenylalanine using General Atomic and Molecular Electronic Structure System (GAMESS) and Gaussian, two computational codes that perform calculations of electronic and vibrational properties of molecules. Through our work, strong bands with N-H and O-H bonds and with benzyl ring were pinpointed and identified. Our work presents insights into the importance of intermolecular bonding of amino acids in the life and physiological processes, including metabolism, signal transduction, and neurotransmission etc.more » « less
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Johnson, Stephen; Zerrad, Essaid; Makrogiannis, Sokratis; Ren, Jun (, Journal of Applied Mathematics and Physics)
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Xu, Yanan; Ren, Jun; Tanzy, Matthew (, Emerging Waveguide Technology)A mathematical analysis is conducted to illustrate the controllability of the Raman soliton self-frequency shift with polynomial nonlinearity in metamaterials by using collective variable method. The polynomial nonlinearity is due to the expanding nonlinear polari-zation PNL in a series over the field E up to the seventh order. Gaussian assumption is selected to these pulses on a generalized mode. The numerical simulation of soliton parameter variation is given for the Gaussian pulse parameters.more » « less
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Ren, Jun; Tyler, Zachary; Kong, Kam; Lu, Qi; Zhao, Jian; Lu, Lu; Osiński, Marek; Arakawa, Yasuhiko; Witzigmann, Bernd (, Physics and Simulation of Optoelectronic Devices XXVI)
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