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Multicellular evolution is a major transition associated with momentous diversification of multiple lineages and increased developmental complexity. The volvocine algae comprise a valuable system for the study of this transition, as they span from unicellular to undifferentiated and differentiated multicellular morphologies despite their genomes being similar, suggesting multicellular evolution requires few genetic changes to undergo dramatic shifts in developmental complexity. Here, the evolutionary dynamics of six volvocine genomes were examined, where a gradual loss of genes was observed in parallel to the co-option of a few key genes. Protein complexes in the six species exhibited novel interactions, suggesting that gene loss could play a role in evolutionary novelty. This finding was supported by gene network modeling, where gene loss outpaces gene gain in generating novel stable network states. These results suggest gene loss, in addition to gene gain and co-option, may be important for the evolution developmental complexity.

 

The evolution of multicellularity is a major evolutionary transition that underlies the radiation of many species in all domains of life, especially in eukaryotes. The volvocine green algae are an unconventional model system that holds great promise in the field given its genetic tractability, late transition to multicellularity, and phenotypic diversity. Multiple efforts at linking multicellularity-related developmental landmarks to key molecular changes, especially at the genome level, have provided key insights into the molecular innovations or lack thereof that underlie multicellularity. Twelve developmental changes have been proposed to explain the evolution of complex differentiated multicellularity in the volvocine algae. Co-option of key genes, such as cell cycle and developmental regulators has been observed, but with few exceptions, known co-option events do not seem to coincide with most developmental features observed in multicellular volvocines. The apparent lack of “master multicellularity genes” combined with no apparent correlation between gene gains for developmental processes suggest the possibility that many multicellular traits might be the product gene-regulatory and functional innovations; in other words, multicellularity can arise from shared genomic repertoires that undergo regulatory and functional overhauls. 

For farmers, policymakers, and government agencies, it is critical to accurately define agricultural crop phenology and its spatial-temporal variability. At the moment, two approaches are utilized to report crop phenology. On one hand, land surface phenology provides information about the overall trend, whereas weekly reports from USDA-NASS provide information about the development of particular crops at the regional level. High-cadence earth observations might help to improve the accuracy of these estimations and bring more precise crop phenology classifications closer to what farmers demand. The second component of the proposed solution requires the use of robust classifiers (e.g., random forest, RF) capable of successfully managing large data sets. To evaluate this solution, this study compared the output of a RF classifier model using weather, two different satellite sources (Planet Fusion; PF and Sentinel-2; S-2), and ground truth data to improve maize (Zea mays L.) crop phenology classification using two regions of Kansas (Southwest and Central) as a testbed during the 2017 growing season. Our findings suggests that high temporal resolution (PF) data can significantly improve crop classification metrics (f1-score = 0.94) relative to S-2 (f1-score = 0.86). Additionally, a decline in the f1-score between 0.74 and 0.60 was obtained when we assessed the ability of S-2 to extend the temporal forecast for crop phenology. This research highlights the critical nature of very high temporal resolution (daily) earth observation data for crop monitoring and decision making in agriculture. 

Abstract Efficient, more accurate reporting of maize ( Zea mays L.) phenology, crop condition, and progress is crucial for agronomists and policy makers. Integration of satellite imagery with machine learning models has shown great potential to improve crop classification and facilitate in-season phenological reports. However, crop phenology classification precision must be substantially improved to transform data into actionable management decisions for farmers and agronomists. An integrated approach utilizing ground truth field data for maize crop phenology (2013–2018 seasons), satellite imagery (Landsat 8), and weather data was explored with the following objectives: (i) model training and validation—identify the best combination of spectral bands, vegetation indices (VIs), weather parameters, geolocation, and ground truth data, resulting in a model with the highest accuracy across years at each season segment (step one) and (ii) model testing—post-selection model performance evaluation for each phenology class with unseen data (hold-out cross-validation) (step two). The best model performance for classifying maize phenology was documented when VIs (NDVI, EVI, GCVI, NDWI, GVMI) and vapor pressure deficit (VPD) were used as input variables. This study supports the integration of field ground truth, satellite imagery, and weather data to classify maize crop phenology, thereby facilitating foundational decision making and agricultural interventions for the different members of the agricultural chain.