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During the Late Pleistocene, major parts of North America were periodically covered by ice sheets. However, there are still questions about whether ice‐free refugia were present in the Alexander Archipelago along the Southeast (SE) Alaska coast during the last glacial maximum (LGM). Numerous subfossils have been recovered from caves in SE Alaska, including American black (Ursus americanus) and brown (U. arctos) bears, which today are found in the Alexander Archipelago but are genetically distinct from mainland bear populations. Hence, these bear species offer an ideal system to investigate long‐term occupation, potential refugial survival and lineage turnover. Here, we present genetic analyses based on 99 new complete mitochondrial genomes from ancient and modern brown and black bears spanning the last ~45,000 years. Black bears form two SE Alaskan subclades, one preglacial and another postglacial, that diverged >100,000 years ago. All postglacial ancient brown bears are closely related to modern brown bears in the archipelago, while a single preglacial brown bear is found in a distantly related clade. A hiatus in the bear subfossil record around the LGM and the deep split of their pre‐ and postglacial subclades fail to support a hypothesis of continuous occupancy in SE Alaska throughout the LGM for either species. Our results are consistent with an absence of refugia along the SE Alaska coast, but indicate that vegetation quickly expanded after deglaciation, allowing bears to recolonize the area after a short‐lived LGM peak.

 

The polar bear ( Ursus maritimus ) has become a symbol of the threat to biodiversity from climate change. Understanding polar bear evolutionary history may provide insights into apex carnivore responses and prospects during periods of extreme environmental perturbations. In recent years, genomic studies have examined bear speciation and population history, including evidence for ancient admixture between polar bears and brown bears ( Ursus arctos ). Here, we extend our earlier studies of a 130,000- to 115,000-y-old polar bear from the Svalbard Archipelago using a 10× coverage genome sequence and 10 new genomes of polar and brown bears from contemporary zones of overlap in northern Alaska. We demonstrate a dramatic decline in effective population size for this ancient polar bear’s lineage, followed by a modest increase just before its demise. A slightly higher genetic diversity in the ancient polar bear suggests a severe genetic erosion over a prolonged bottleneck in modern polar bears. Statistical fitting of data to alternative admixture graph scenarios favors at least one ancient introgression event from brown bears into the ancestor of polar bears, possibly dating back over 150,000 y. Gene flow was likely bidirectional, but allelic transfer from brown into polar bear is the strongest detected signal, which contrasts with other published work. These findings may have implications for our understanding of climate change impacts: Polar bears, a specialist Arctic lineage, may not only have undergone severe genetic bottlenecks but also been the recipient of generalist, boreal genetic variants from brown bears during critical phases of Northern Hemisphere glacial oscillations. 

Abstract We leverage a data set of >720 shell-bearing marine deposits throughout southeastern Alaska (USA) to develop updated relative sea-level curves that span the past ∼14,000 yr. This data set includes site location, elevation, description when available, and 436 14C ages, 45 of which are published here for the first time. Our sea-level curves suggest a peripheral forebulge developed west of the retreating Cordilleran Ice Sheet (CIS) margin between ca. 17,000 and 10,800 calibrated yr B.P. By 14,870 ± 630 to 12,820 ± 340 cal. yr B.P., CIS margins had retreated from all of southeastern Alaska's fjords, channels, and passages. At this time, isolated or stranded ice caps existed on the islands, with alpine or tidewater glaciers in many valleys. Paleoshorelines up to 25 m above sea level mark the maximum elevation of transgression in the southern portion of the study region, which was achieved by 11,000 ± 390 to 10,500 ± 420 cal. yr B.P. The presence of Pacific sardine (Sardinops sagax) and the abundance of charcoal in sediments that date between 11,000 ± 390 and 7630 ± 90 cal. yr B.P. suggest that both ocean and air temperatures in southeastern Alaska were relatively warm in the early Holocene. The sea-level and paleoenvironmental reconstruction presented here can inform future investigations into the glacial, volcanic, and archaeological history of southeastern Alaska. 

Abstract Understanding marine-terminating ice sheet response to past climate transitions provides valuable long-term context for observations of modern ice sheet change. Here, we reconstruct the last deglaciation of marine-terminating Cordilleran Ice Sheet (CIS) margins in Southeast Alaska and explore potential forcings of western CIS retreat. We combine 27 new cosmogenic 10 Be exposure ages, 13 recently published 10 Be ages, and 25 new 14 C ages from raised marine sediments to constrain CIS recession. Retreat from the outer coast was underway by 17 ka, and the inner fjords and sounds were ice-free by 15 ka. After 15 ka, the western margin of the CIS became primarily land-terminating and alpine glaciers disappeared from the outer coast. Isolated alpine glaciers may have persisted in high inland peaks until the early Holocene. Our results suggest that the most rapid phase of CIS retreat along the Pacific coast occurred between ~17 and 15 ka. This retreat was likely driven by processes operating at the ice-ocean interface, including sea level rise and ocean warming. CIS recession after ~15 ka occurred during a time of climatic amelioration in this region, when both ocean and air temperatures increased. These data highlight the sensitivity of marine-terminating CIS regions to deglacial climate change.