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Abstract Thermokarst lakes cause abrupt and sustained permafrost degradation and have the potential to release large quantities of ancient carbon to the atmosphere. Despite concerns about how lakes will affect the permafrost carbon feedback, the magnitude of carbon dioxide and methane emissions from deep permafrost soils remains poorly understood. Here we incubated a very deep sediment core (20 m) to constrain the potential productivity of thawed Yedoma and underlying Quaternary sand and gravel deposits. Through radiocarbon dating, sediment incubations and sediment facies classifications, we show that extensive permafrost thaw can occur beneath lakes on timescales of decades to centuries. Although it has been assumed that shallow, aerobic carbon dioxide production will dominate the climate impact of permafrost thaw, we found that anaerobic carbon dioxide and methane production from deep sediments was commensurate with aerobic production on a per gram carbon basis, and had double the global warming potential at warmer temperatures. Carbon release from deep Arctic sediments may thus have a more substantial impact on a changing climate than currently anticipated. These environments are presently overlooked in estimates of the permafrost carbon feedback. 

Abstract Landscape drying associated with permafrost thaw is expected to enhance microbial methane oxidation in arctic soils. Here we show that ice-rich, Yedoma permafrost deposits, comprising a disproportionately large fraction of pan-arctic soil carbon, present an alternate trajectory. Field and laboratory observations indicate that talik (perennially thawed soils in permafrost) development in unsaturated Yedoma uplands leads to unexpectedly large methane emissions (35–78 mg m⁻² d⁻¹summer, 150–180 mg m⁻² d⁻¹winter). Upland Yedoma talik emissions were nearly three times higher annually than northern-wetland emissions on an areal basis. Approximately 70% emissions occurred in winter, when surface-soil freezing abated methanotrophy, enhancing methane escape from the talik. Remote sensing and numerical modeling indicate the potential for widespread upland talik formation across the pan-arctic Yedoma domain during the 21^stand 22^ndcenturies. Contrary to current climate model predictions, these findings imply a positive and much larger permafrost-methane-climate feedback for upland Yedoma. 

Abstract The ongoing global temperature rise enhances permafrost thaw in the Arctic, allowing Pleistocene‐aged frozen soil organic matter to become available for microbial degradation and production of greenhouse gases, particularly methane. Here, we examined the extent and mechanism of anaerobic oxidation of methane (AOM) in the sediments of four interior Alaska thermokarst lakes, which formed and continue to expand as a result of ice‐rich permafrost thaw. In cores of surface (~ 1 m) lake sediments we quantified methane production (methanogenesis) and AOM rates using anaerobic incubation experiments in low (4°C) and high (16°C) temperatures. Methanogenesis rates were measured by the accumulation of methane over ~ 90 d, whereas AOM rates were measured by adding labeled‐¹³CH₄and measuring the produced dissolved inorganic¹³C. Our results demonstrate that while methanogenesis was vigorous in these anoxic sediments, AOM was lower by two orders of magnitude. In almost all sediment depths and temperatures, AOM rates remained less than 2% of the methanogenesis rates. Experimental evidence indicates that the AOM is strongly related to methanogens, as the addition of a methanogens' inhibitor prevented AOM. Variety of electron acceptor additions did not stimulate AOM, and methanotrophs were scarcely detected. These observations suggest that the AOM signals in the incubation experiments might be a result of enzymatic reversibility (“back‐flux”) during CH₄production, rather than thermodynamically favorable AOM. Regardless of the mechanism, the quantitative results show that near surface (< 1‐m) thermokarst sediments in interior Alaska have little to no buffer mechanisms capable of attenuating methane production in a warming climate. 

Abstract Methane (CH₄) release to the atmosphere from thawing permafrost contributes significantly to global CH₄emissions. However, constraining the effects of thaw that control the production and emission of CH₄is needed to anticipate future Arctic emissions. Here are presented robust rate measurements of CH₄production and cycling in a region of rapidly degrading permafrost. Big Trail Lake, located in central Alaska, is a young, actively expanding thermokarst lake. The lake was investigated by taking two 1 m cores of sediment from different regions. Two independent methods of measuring microbial CH₄ production, long term (CH₄accumulation) and short term (¹⁴C tracer), produced similar average rates of 11 ± 3.5 and 9 ± 3.6 nmol cm⁻³ d⁻¹, respectively. The rates had small variations between the different lithological units, indicating homogeneous CH₄production despite heterogeneous lithology in the surface ~1 m of sediment. To estimate the total CH₄production, the CH₄production rates were multiplied through the 10–15 m deep talik (thaw bulb). This estimate suggests that CH₄ production is higher than emission by a maximum factor of ~2, which is less than previous estimates. Stable and radioactive carbon isotope measurements showed that 50% of dissolved CH₄in the first meter was produced further below. Interestingly, labeled¹⁴C incubations with 2‐¹⁴C acetate and¹⁴C CO₂indicate that variations in the pathway used by microbes to produce CH₄depends on the age and type of organic matter in the sediment, but did not appear to influence the rates at which CH₄ was produced. This study demonstrates that at least half of the CH₄produced by microbial breakdown of organic matter in actively expanding thermokarst is emitted to the atmosphere, and that the majority of this CH₄is produced in the deep sediment. 

Abstract Thermokarst lakes accelerate deep permafrost thaw and the mobilization of previously frozen soil organic carbon. This leads to microbial decomposition and large releases of carbon dioxide (CO₂) and methane (CH₄) that enhance climate warming. However, the time scale of permafrost-carbon emissions following thaw is not well known but is important for understanding how abrupt permafrost thaw impacts climate feedback. We combined field measurements and radiocarbon dating of CH₄ebullition with (a) an assessment of lake area changes delineated from high-resolution (1–2.5 m) optical imagery and (b) geophysical measurements of thaw bulbs (taliks) to determine the spatiotemporal dynamics of hotspot-seep CH₄ebullition in interior Alaska thermokarst lakes. Hotspot seeps are characterized as point-sources of high ebullition that release¹⁴C-depleted CH₄from deep (up to tens of meters) within lake thaw bulbs year-round. Thermokarst lakes, initiated by a variety of factors, doubled in number and increased 37.5% in area from 1949 to 2009 as climate warmed. Approximately 80% of contemporary CH₄hotspot seeps were associated with this recent thermokarst activity, occurring where 60 years of abrupt thaw took place as a result of new and expanded lake areas. Hotspot occurrence diminished with distance from thermokarst lake margins. We attribute older¹⁴C ages of CH₄released from hotspot seeps in older, expanding thermokarst lakes (¹⁴C_CH420 079 ± 1227 years BP, mean ± standard error (s.e.m.) years) to deeper taliks (thaw bulbs) compared to younger¹⁴C_CH4in new lakes (¹⁴C_CH48526 ± 741 years BP) with shallower taliks. We find that smaller, non-hotspot ebullition seeps have younger¹⁴C ages (expanding lakes 7473 ± 1762 years; new lakes 4742 ± 803 years) and that their emissions span a larger historic range. These observations provide a first-order constraint on the magnitude and decadal-scale duration of CH₄-hotspot seep emissions following formation of thermokarst lakes as climate warms. 

Permafrost thaw increases the bioavailability of ancient organic matter, facilitating microbial metabolism of volatile organic compounds (VOCs), carbon dioxide, and methane (CH₄). The formation of thermokarst (thaw) lakes in icy, organic-rich Yedoma permafrost leads to high CH₄emissions, and subsurface microbes that have the potential to be biogeochemical drivers of organic carbon turnover in these systems. However, to better characterize and quantify rates of permafrost changes, methods that further clarify the relationship between subsurface biogeochemical processes and microbial dynamics are needed. In this study, we investigated four sites (two well-drained thermokarst mounds, a drained thermokarst lake, and the terrestrial margin of a recently formed thermokarst lake) to determine whether biogenic VOCs (1) can be effectively collected during winter, and (2) whether winter sampling provides more biologically significant VOCs correlated with subsurface microbial metabolic potential. During the cold season (March 2023), we drilled boreholes at the four sites and collected cores to simultaneously characterize microbial populations and captured VOCs. VOC analysis of these sites revealed “fingerprints” that were distinct and unique to each site. Total VOCs from the boreholes included > 400 unique VOC features, including > 40 potentially biogenic VOCs related to microbial metabolism. Subsurface microbial community composition was distinct across sites; for example, methanogenic archaea were far more abundant at the thermokarst site characterized by high annual CH₄emissions. The results obtained from this method strongly suggest that ∼10% of VOCs are potentially biogenic, and that biogenic VOCs can be mapped to subsurface microbial metabolisms. By better revealing the relationship between subsurface biogeochemical processes and microbial dynamics, this work advances our ability to monitor and predict subsurface carbon turnover in Arctic soils. 

This review examines recent developments in the application of stable isotope analyses (δ18O, δ13C, δ15N, δD) to lacustrine invertebrate remains. These remains are ubiquitous in lacustrine sediments and thus provide an opportunity to measure changes in stable isotope ratios across a range of timescales and environments and allow interpretive power beyond taxonomic studies. To date they have been relatively understudied in comparison to carbonate fossils and offer both opportunities and challenges and we explore both themes in this review. This review will explore improvements to analytical instrumentation and the opportunities that this presents, it will look at a range of new studies of the modern lacustrine environment and how these studies allow a more nuanced palaeoenvironmental approach. We review recent studies that have used these advancements in understanding to help to reveal new knowledge of past climates, environments and ecology. In addition, we explore new studies that help to elucidate the role of methane-derived carbon to lacustrine food webs and the drivers behind this, including new data to estimate the contribution of methane derived carbon to an arctic lake. We conclude that major progress is currently being made in invertebrate-isotope analyses, and we expect this to continue apace. 

Abstract Permafrost underlies approximately one quarter of Northern Hemisphere terrestrial surfaces and contains 25–50% of the global soil carbon (C) pool. Permafrost soils and the C stocks within are vulnerable to ongoing and future projected climate warming. The biogeography of microbial communities inhabiting permafrost has not been examined beyond a small number of sites focused on local-scale variation. Permafrost is different from other soils. Perennially frozen conditions in permafrost dictate that microbial communities do not turn over quickly, thus possibly providing strong linkages to past environments. Thus, the factors structuring the composition and function of microbial communities may differ from patterns observed in other terrestrial environments. Here, we analyzed 133 permafrost metagenomes from North America, Europe, and Asia. Permafrost biodiversity and taxonomic distribution varied in relation to pH, latitude and soil depth. The distribution of genes differed by latitude, soil depth, age, and pH. Genes that were the most highly variable across all sites were associated with energy metabolism and C-assimilation. Specifically, methanogenesis, fermentation, nitrate reduction, and replenishment of citric acid cycle intermediates. This suggests that adaptations to energy acquisition and substrate availability are among some of the strongest selective pressures shaping permafrost microbial communities. The spatial variation in metabolic potential has primed communities for specific biogeochemical processes as soils thaw due to climate change, which could cause regional- to global- scale variation in C and nitrogen processing and greenhouse gas emissions.