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Abstract PremiseThe preservation of plant tissues in ethanol is conventionally viewed as problematic. Here, we show that leaf preservation in ethanol combined with proteinase digestion can provide high‐quality DNA extracts. Additionally, as a pretreatment, ethanol can facilitate DNA extraction for recalcitrant samples. MethodsDNA was isolated from leaves preserved with 96% ethanol or from silica‐desiccated leaf samples and herbarium fragments that were pretreated with ethanol. DNA was extracted from herbarium tissues using a special ethanol pretreatment protocol, and these extracts were compared with those obtained using the standard cetyltrimethylammonium bromide (CTAB) method. ResultsDNA extracted from tissue preserved in, or pretreated with, ethanol was less fragmented than DNA from tissues without pretreatment. Adding proteinase digestion to the lysis step increased the amount of DNA obtained from the ethanol‐pretreated tissues. The combination of the ethanol pretreatment with liquid nitrogen freezing and a sorbitol wash prior to cell lysis greatly improved the quality and yield of DNA from the herbarium tissue samples. DiscussionThis study critically reevaluates the consequences of ethanol for plant tissue preservation and expands the utility of pretreatment methods for molecular and phylogenomic studies.more » « less
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Landis, Michael J.; Quintero, Ignacio; Muñoz, Martha M.; Zapata, Felipe; Donoghue, Michael J. (, Proceedings of the National Academy of Sciences)Regional features of geography, such as size or distance, are expected to shape how lineages disperse, go extinct, and speciate. Yet this fundamental link between geographical context and evolutionary consequence has not been fully incorporated into phylogenetic models of biogeography. We designed a model that allows variation in regional features (size, distance, insularity, and oceanic separation) to inform rates of biogeographic change. Our approach uses a Bayesian hierarchical modeling framework to transform regional values of quantitative and categorical features into evolutionary rates. We also make use of a parametric range split score to quantify range cohesion for widespread species, thereby allowing geographical barriers to initiate “range-splitting” speciation events. Applying our approach to Anolis lizards, a species-rich neotropical radiation, we found that distance between regions, especially over water, decreases dispersal rates and increases between-region speciation rates. For distances less than ∼470 km over land, anoles tended to disperse faster than they speciate between regions. Over oceans, the equivalent maximum range cohesion distance fell to ∼160 km. Our results suggest that the historical biogeography of founder event speciation may be productively studied when the same barriers that inhibit dispersal also promote speciation between regions.more » « less