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ABSTRACT Woody encroachment—the expansion of woody shrubs into grasslands—is a widely documented phenomenon with global significance for the water cycle. However, its effects on watershed hydrology, including streamflow and groundwater recharge, remain poorly understood. A key challenge is the limited understanding of how changes to root abundance, size and distribution across soil depths influence infiltration and preferential flow. We hypothesised that woody shrubs would increase and deepen coarse‐root abundance and effective soil porosity, thus promoting deeper soil water infiltration and increasing soil water flow velocities. To test this hypothesis, we conducted a study at the Konza Prairie Biological Station in Kansas, where roughleaf dogwood (Cornus drummondii) is the predominant woody shrub encroaching into native tallgrass prairie. We quantified the distribution of coarse and fine roots and leveraged soil moisture time series and electrical resistivity imaging to analyse soil water flow beneath shrubs and grasses. We observed a greater fraction of coarse roots beneath shrubs compared to grasses, which was concurrent with greater saturated hydraulic conductivity and effective porosity. Half‐hourly rainfall and soil moisture data show that the average soil water flow through macropores was 135% greater beneath shrubs than grasses at the deepest B horizon, consistent with greater saturated hydraulic conductivity. Soil‐moisture time series and electrical resistivity imaging also indicated that large rainfall events and greater antecedent wetness promoted more flow in the deeper layers beneath shrubs than beneath grasses. These findings suggest that woody encroachment alters soil hydrologic processes with cascading consequences for ecohydrological processes, including increased vertical connectivity and potential groundwater recharge. 

Intermittent headwater streams are highly vulnerable to environmental disturbances, but effective management of these water resources requires first understanding the mechanisms that generate streamflow. This study examined mechanisms governing streamflow generation in merokarst terrains, a type of carbonate terrain that covers much of the central United States yet has received relatively little attention in hydrological studies. We used high-frequency sampling of precipitation, stream water, and groundwater during summer 2021 to quantify the contributions to streamflow from different water sources and characterize their short-term dynamics in a 1.2 km 2 merokarst catchment at the Konza Prairie Biological Station (Kansas, USA). Mixing calculations using stable water isotopes and dissolved ions indicate that streamflow is overwhelmingly contributed by groundwater discharge from thin (1–2 m) limestone aquifers, even during wet periods, when soil water and surface runoff are generally expected to be more important. Relationships between hydraulic heads in the aquifers and their contributions to streamflow differed early in the study period compared to later, after a major storm occurred, suggesting there is a critical threshold of groundwater storage that the bedrock needs to attain before fully connecting to the stream. Furthermore, contributions from each limestone unit varied during the study period in response to differences in their hydrogeological properties and/or their stratigraphic position, which in turn impacted both the length of streamflow and its composition. Taken together, we interpret that the subsurface storage threshold and variation in aquifer properties are major controllers of flow intermittency in merokarst headwater catchments.