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Abstract In-situ visual observations of marine organisms is crucial to developing behavioural understandings and their relations to their surrounding ecosystem. Typically, these observations are collected via divers, tags, and remotely-operated or human-piloted vehicles. Recently, however, autonomous underwater vehicles equipped with cameras and embedded computers with GPU capabilities are being developed for a variety of applications, and in particular, can be used to supplement these existing data collection mechanisms where human operation or tags are more difficult. Existing approaches have focused on using fully-supervised tracking methods, but labelled data for many underwater species are severely lacking. Semi-supervised trackers may offer alternative tracking solutions because they require less data than fully-supervised counterparts. However, because there are not existing realistic underwater tracking datasets, the performance of semi-supervised tracking algorithms in the marine domain is not well understood. To better evaluate their performance and utility, in this paper we provide (1) a novel dataset specific to marine animals located athttp://warp.whoi.edu/vmat/, (2) an evaluation of state-of-the-art semi-supervised algorithms in the context of underwater animal tracking, and (3) an evaluation of real-world performance through demonstrations using a semi-supervised algorithm on-board an autonomous underwater vehicle to track marine animals in the wild. 

In this paper, we propose a novel method for autonomously seeking out sparsely distributed targets in an unknown underwater environment. Our Sparse Adaptive Search and Sample (SASS) algorithm mixes low-altitude observations of discrete targets with high-altitude observations of the surrounding substrates. By using prior information about the distribution of targets across substrate types in combination with belief modelling over these substrates in the environment, high-altitude observations provide information that allows SASS to quickly guide the robot to areas with high target densities. A maximally informative path is autonomously constructed online using Monte Carlo Tree Search with a novel acquisition function to guide the search to maximise observations of unique targets. We demonstrate our approach in a set of simulated trials using a novel generative species model. SASS consistently outperforms the canonical boustrophedon planner by up to 36% in seeking out unique targets in the first 75 - 90% of time it takes for a boustrophedon survey. Additionally, we verify the performance of SASS on two real world coral reef datasets. 

In this paper, we present an approach that enables long-term monitoring of biological activity on coral reefs by extending mission time and adaptively focusing sensing resources on high-value periods. Coral reefs are one of the most biodiverse ecosystems on the planet; yet they are also among the most imperiled: facing bleaching, ecological community collapses due to global climate change, and degradation from human activities. Our proposed method improves the ability of scientists to monitor biological activity and abundance using passive acoustic sensors. We accomplish this by extracting periodicities from the observed abundance, and using them to predict future abundance. This predictive model is then used with a Monte Carlo Tree Search planning algorithm to schedule sampling at periods of high biological activity, and power down the sensor during periods of low activity. In simulated experiments using long-term acoustic datasets collected in the US Virgin Islands, our adaptive Online Sensor Scheduling algorithm is able to double the lifetime of a sensor while simultaneously increasing the average observed acoustic activity by 21%.