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Abstract Ponds, wetlands, and shallow lakes (collectively “shallow waterbodies”) are among the most biogeochemically active freshwater ecosystems. Measurements of gross primary production (GPP), respiration (R), and net ecosystem production (NEP) are rare in shallow waterbodies compared to larger and deeper lakes, which can bias our understanding of lentic ecosystem processes. In this study, we calculated GPP, R, and NEP in 26 small, shallow waterbodies across temperate North America and Europe. We observed high rates of GPP (mean 8.4 g O₂ m⁻³ d⁻¹) and R (mean −9.1 g O₂ m⁻³ d⁻¹), while NEP varied from net heterotrophic to autotrophic. Metabolism rates were affected by depth and aquatic vegetation cover, and the shallowest waterbodies had the highest GPP, R, and the most variable NEP. The shallow waterbodies from this study had considerably higher metabolism rates compared to deeper lakes, stressing the importance of these systems as highly productive biogeochemical hotspots. 

Abstract Inland waters play a major role in global greenhouse gas (GHG) budgets. The smallest of these systems (i.e., ponds) have a particularly large—but poorly constrained—emissions footprint at the global scale. Much of this uncertainty is due to a poor understanding of temporal variability in emissions. Here, we conducted high‐resolution temporal sampling to quantify GHG exchange between four temperate constructed ponds and the atmosphere on an annual basis. We show these ponds are a net source of GHGs to the atmosphere (564.4 g CO₂‐eq m⁻² yr⁻¹), driven by highly temporally variable diffusive methane (CH₄) emissions. Diffusive CH₄release to the atmosphere was twice as high during periods when the ponds had a stratified water column than when it was mixed. Ebullitive CH₄release was also higher during stratification. Building ponds to favor mixed conditions thus presents an opportunity to minimize the global GHG footprint of future pond construction.