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In recent years, the global transition towards green energy, driven by environmental concerns and increasing electricity demands, has remarkably reshaped the energy landscape. The transformative potential of marine wind energy is particularly critical in securing a sustainable energy future. To achieve this objective, it is essential to have an accurate understanding of wind dynamics and their interactions with ocean waves for the proper design and operation of offshore wind turbines (OWTs). The accuracy of met-ocean models depends critically on their ability to correctly capture sea-surface drag over the multiscale ocean surface—a quantity typically not directly resolved in numerical models and challenging to acquire using either field or laboratory measurements. Although skin friction drag contributes considerably to the total wind stress, especially at moderate wind speeds, it is notoriously challenging to predict using physics-based approaches. The current work introduces a novel approach based on a convolutional neural network (CNN) model to predict the spatial distributions of skin friction drag over wind-generated surface waves using wave profiles, local wave slopes, local wave phases, and the scaled wind speed. The CNN model is trained using a set of high-resolution laboratory measurements of air-side velocity fields and their respective surface viscous stresses obtained over a range of wind-wave conditions. The results demonstrate the capability of our model to accurately estimate both the instantaneous and area-aggregate viscous stresses for unseen wind-wave regimes. The proposed CNN-based wall-layer model offers a viable pathway for estimating the local and averaged skin friction drag in met-ocean simulations.