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Meeks, Kitty; Scheideler, Christian (Ed.)The Tile Automata (TA) model describes self-assembly systems in which monomers can build structures and transition with an adjacent monomer to change their states. This paper shows that seeded TA is a non-committal intrinsically universal model of self-assembly. We present a single universal Tile Automata system containing approximately 4600 states that can simulate (a) the output assemblies created by any other Tile Automata system Γ, (b) the dynamics involved in building Γ’s assemblies, and (c) Γ’s internal state transitions. It does so in a non-committal way: it preserves the full non-deterministic dynamics of a tile’s potential attachment or transition by selecting its state in a single step, considering all possible outcomes until the moment of selection. The system uses supertiles, each encoding the complete system being simulated. The universal system builds supertiles from its seed, each representing a single tile in Γ, transferring the information to simulate Γ to each new tile. Supertiles may also asynchronously transition states according to the rules of Γ. This result also implies IU for pairwise asynchronous Cellular Automata.more » « less
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Meeks, Kitty; Scheideler, Christian (Ed.)For general discrete Chemical Reaction Networks (CRNs), the fundamental problem of reachability - the question of whether a target configuration can be produced from a given initial configuration - was recently shown to be Ackermann-complete. However, many open questions remain about which features of the CRN model drive this complexity. We study a restricted class of CRNs with void rules, reactions that only decrease species counts. We further examine this regime in the motivated model of step CRNs, which allow additional species to be introduced in discrete stages. With and without steps, we characterize the complexity of the reachability problem for CRNs with void rules. We show that, without steps, reachability remains polynomial-time solvable for bimolecular systems but becomes NP-complete for larger reactions. Conversely, with just a single step, reachability becomes NP-complete even for bimolecular systems. Beyond what is contained in this brief announcement, we also investigate optimization variants of reachability, provide approximation results for maximizing species deletion, establish ETH-based lower bounds for NP-complete cases, and prove hardness for counting reaction sequences.more » « less
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Meeks, Kitty; Scheideler, Christian (Ed.)This work fully characterizes fractal generation in the seeded Tile Automata model (seeded TA), a model similar to the abstract Tile Assembly model (aTAM) with the added ability for adjacent tiles to change states. Under these assumptions, we first show that all discrete self-similar fractals (DSSFs) with feasible generators are strictly buildable at scale 1 and temperature 1 in seeded TA. We then show that these results imply the existence of a single seeded TA system Γ that can strictly build any DSSF infinitely at scale 1 and temperature 1.more » « less
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Scheideler, Christian (Ed.)Nakamoto’s consensus protocol works in a permissionless model, where nodes can join and leave without notice. However, it guarantees agreement only probabilistically. Is this weaker guarantee a necessary concession to the severe demands of supporting a permissionless model? This paper shows that, at least in a benign failure model, it is not. It presents Sandglass, the first permissionless con- sensus algorithm that guarantees deterministic agreement and termination with probability 1 under general omission failures. Like Nakamoto, Sandglass adopts a hybrid synchronous communication model, where, at all times, a majority of nodes (though their number is unknown) are correct and synchronously connected, and allows nodes to join and leave at any time.more » « less
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Scheideler, Christian (Ed.)The foraging problem asks how a collective of particles with limited computational, communication and movement capabilities can autonomously compress around a food source and disperse when the food is depleted or shifted, which may occur at arbitrary times. We would like the particles to iteratively self-organize, using only local interactions, to correctly gather whenever a food particle remains in a position long enough and search if no food particle has existed recently. Unlike previous approaches, these search and gather phases should be self-induced so as to be indefinitely repeatable as the food evolves, with microscopic changes to the food triggering macroscopic, system-wide phase transitions. We present a stochastic foraging algorithm based on a phase change in the fixed magnetization Ising model from statistical physics: Our algorithm is the first to leverage self-induced phase changes as an algorithmic tool. A key component of our algorithm is a careful token passing mechanism ensuring a dispersion broadcast wave will always outpace a compression wave.more » « less
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