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1. Discrete Fréchet Distance Oracles

   https://doi.org/10.4230/LIPIcs.SoCG.2024.10  

   Aronov, Boris; Farhana, Tsuri; Katz, Matthew J; Ramesh, Indu (June 2024, Schloss Dagstuhl – Leibniz-Zentrum für Informatik)

   Mulzer, Wolfgang; Phillips, Jeff M (Ed.)

   It is unlikely that the discrete Fréchet distance between two curves of length n can be computed in strictly subquadratic time. We thus consider the setting where one of the curves, P, is known in advance. In particular, we wish to construct data structures (distance oracles) of near-linear size that support efficient distance queries with respect to P in sublinear time. Since there is evidence that this is impossible for query curves of length Θ(n^α), for any α > 0, we focus on query curves of (small) constant length, for which we are able to devise distance oracles with the desired bounds. We extend our tools to handle subcurves of the given curve, and even arbitrary vertex-to-vertex subcurves of a given geometric tree. That is, we construct an oracle that can quickly compute the distance between a short polygonal path (the query) and a path in the preprocessed tree between two query-specified vertices. Moreover, we define a new family of geometric graphs, t-local graphs (which strictly contains the family of geometric spanners with constant stretch), for which a similar oracle exists: we can preprocess a graph G in the family, so that, given a query segment and a pair u,v of vertices in G, one can quickly compute the smallest discrete Fréchet distance between the segment and any (u,v)-path in G. The answer is exact, if t = 1, and approximate if t > 1. 

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2. A trust model for bootstrap percolation

   Bhansali, Rinni; Schaposnik, Laura P (March 2020, Proceedings)

   This paper is dedicated to the study of the interaction between dynamical systems and percolation models, with views towards the study of viral infections whose virus mutate with time. Recall that r-bootstrap percolation describes a deterministic process where vertices of a graph are infected once r neighbors of it are infected. We generalize this by introducing F(t)-bootstrap percolation, a time-dependent process where the number of neighbouring vertices which need to be infected for a disease to be transmitted is determined by a percolation function F(t) at each time t. After studying some of the basic properties of the model, we consider smallest percolating sets and construct a polynomial-timed algorithm to nd one smallest minimal percolating set on nite trees for certain F(t)-bootstrap percolation models. 

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3. Counting and Sampling Labeled Chordal Graphs in Polynomial Time

   https://doi.org/10.4230/LIPIcs.ESA.2023.58  

   Hébert-Johnson, Úrsula; Lokshtanov, Daniel; Vigoda, Eric (January 2023, Schloss Dagstuhl – Leibniz-Zentrum für Informatik)

   Gørtz, Inge Li; Farach-Colton, Martin; Puglisi, Simon J; Herman, Grzegorz (Ed.)

   We present the first polynomial-time algorithm to exactly compute the number of labeled chordal graphs on n vertices. Our algorithm solves a more general problem: given n and ω as input, it computes the number of ω-colorable labeled chordal graphs on n vertices, using O(n⁷) arithmetic operations. A standard sampling-to-counting reduction then yields a polynomial-time exact sampler that generates an ω-colorable labeled chordal graph on n vertices uniformly at random. Our counting algorithm improves upon the previous best result by Wormald (1985), which computes the number of labeled chordal graphs on n vertices in time exponential in n. An implementation of the polynomial-time counting algorithm gives the number of labeled chordal graphs on up to 30 vertices in less than three minutes on a standard desktop computer. Previously, the number of labeled chordal graphs was only known for graphs on up to 15 vertices. 

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4. A Faster Algorithm for Minimum-cost Bipartite Perfect Matching in Planar Graphs

   https://doi.org/10.1145/3365006  

   Asathulla, Mudabir Kabir; Khanna, Sanjeev; Lahn, Nathaniel; Raghvendra, Sharath (January 2020, ACM Transactions on Algorithms)

   null (Ed.)

   Given a weighted planar bipartite graph G ( A ∪ B , E ) where each edge has an integer edge cost, we give an Õ( n 4/3 log nC ) time algorithm to compute minimum-cost perfect matching; here C is the maximum edge cost in the graph. The previous best-known planarity exploiting algorithm has a running time of O ( n 3/2 log n ) and is achieved by using planar separators (Lipton and Tarjan ’80). Our algorithm is based on the bit-scaling paradigm (Gabow and Tarjan ’89). For each scale, our algorithm first executes O ( n 1/3 ) iterations of Gabow and Tarjan’s algorithm in O ( n 4/3 ) time leaving only O ( n 2/3 ) vertices unmatched. Next, it constructs a compressed residual graph H with O ( n 2/3 ) vertices and O ( n ) edges. This is achieved by using an r -division of the planar graph G with r = n 2/3 . For each partition of the r -division, there is an edge between two vertices of H if and only if they are connected by a directed path inside the partition. Using existing efficient shortest-path data structures, the remaining O ( n 2/3 ) vertices are matched by iteratively computing a minimum-cost augmenting path, each taking Õ( n 2/3 ) time. Augmentation changes the residual graph, so the algorithm updates the compressed representation for each partition affected by the change in Õ( n 2/3 ) time. We bound the total number of affected partitions over all the augmenting paths by O ( n 2/3 log n ). Therefore, the total time taken by the algorithm is Õ( n 4/3 ). 

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5. Scalable Mining of Maximal Quasi-Cliques: An Algorithm-System Codesign Approach

   https://doi.org/10.14778/3436905.3436916  

   Guo, Guimu; Yan, Da; Özsu, M. Tamer; Jiang, Zhe; Khalil, Jalal (January 2020, Proceedings of the VLDB Endowment)

   null (Ed.)

   Given a user-specified minimum degree threshold γ, a γ-quasi-clique is a subgraph g = (Vg, Eg) where each vertex ν ∈ Vg connects to at least γ fraction of the other vertices (i.e., ⌈γ · (|Vg|- 1)⌉ vertices) in g. Quasi-clique is one of the most natural definitions for dense structures useful in finding communities in social networks and discovering significant biomolecule structures and pathways. However, mining maximal quasi-cliques is notoriously expensive. In this paper, we design parallel algorithms for mining maximal quasi-cliques on G-thinker, a distributed graph mining framework that decomposes mining into compute-intensive tasks to fully utilize CPU cores. We found that directly using G-thinker results in the straggler problem due to (i) the drastic load imbalance among different tasks and (ii) the difficulty of predicting the task running time. We address these challenges by redesigning G-thinker's execution engine to prioritize long-running tasks for execution, and by utilizing a novel timeout strategy to effectively decompose long-running tasks to improve load balancing. While this system redesign applies to many other expensive dense subgraph mining problems, this paper verifies the idea by adapting the state-of-the-art quasi-clique algorithm, Quick, to our redesigned G-thinker. Extensive experiments verify that our new solution scales well with the number of CPU cores, achieving 201× runtime speedup when mining a graph with 3.77M vertices and 16.5M edges in a 16-node cluster. 

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