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Many behaviors that we perform everyday, including something as familiar as making a peanut-butter sandwich, consist of a sequence of recognizable acts. These acts may include, for example, holding a knife and opening a jar. Yet often neither the sequence nor the individual acts are always performed in the exact same way. For example, there are many ways to hold a knife and there are many ways to open a jar, meaning neither of these actions could be called “stereotyped”. A lack of stereotypy makes it difficult for a computer to automatically recognize the individual acts in a sequence. This same problem would apply to other common behaviors, such as walking around somewhere you have not visited before. While we easily recognize it when we see it, walking is not a stereotyped behavior. It consists of a series of movements that differ between individuals, and even in the same individual at different times. So how can someone automatically recognize the individual acts in a non-stereotyped behavior like walking? To begin to find out, Tao et al. developed a mathematical model that can recognize the walking behavior of a fruit fly. Existing recordings of fruit flies walking were analyzed using a type of mathematical model called a Hierarchical Hidden Markov Model (often shortened to HHMM). Such models assume that there are hidden states that influence the behaviors we can see. For example, someone’s chances of going skiing (an observable behavior) depend on whether or not it is winter (a hidden state). The HHMM revealed that the seemingly random wanderings of a fly consist of ten types of movement. These include the “meander”, the “stop-and-walk”, as well as right turns and left turns. Exposing the flies to a pleasant odor – in this case, apple cider vinegar – altered how the flies walked by changing the time they spent performing each of the different types of movement. All flies in the dataset used the same ten movements, but in different proportions. This means that each fly showed an individual pattern of movement. In fact, the differences between flies are so great that Tao et al. argue that there is no such thing as an average walk for a fruit fly. The model represents a complete description of how fruit flies walk. It thus provides clues to the processes that transform an animal’s sensory experiences into behavior. But it also has potential clinical applications. Similar models for human behaviors could help reveal behaviors that are abnormal because of disease. Normal behaviors also show variability, and some diseases increase or decrease this variability. By making it easier to detect these changes, mathematical models could support earlier diagnosis of medical conditions.
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Automated analysis of long-term grooming behavior in Drosophila using a k-nearest neighbors classifier
From birds that preen their feathers to dogs that lick their fur, many animals groom themselves. They do so to stay clean, but routine grooming also has a range of other uses, such as social communication or controlling body temperature. Despite its importance, grooming remains poorly understood; it is especially unclear how this behavior is regulated. Fruit flies could be a good model to study grooming because they are often used in laboratories to look into the genetic and brain mechanisms that control behavior. Flies clean themselves by sweeping their legs over their wings and body, but little is known about how the insects groom ‘naturally’ over long periods of time. This is partly because scientists have had to recognize and classify grooming behavior by eye, which is highly time-consuming. Here, Qiao, Li et al. have created a system to automatically detect grooming behavior in fruit flies over time. First, a camera records the movement of an individual insect. A computer then analyzes the images and picks out general features of the fly’s movement that can help work out what the insect is doing. For example, if a fly is moving its limbs, but not the main part of its body, it is probably grooming itself. Qiao, Li et al. then borrowed an algorithm from an area of computer science known as ‘machine learning’ to teach the computer how to classify each fly’s behavior automatically. The new system successfully recognized grooming behavior in over 90% of cases, and it revealed that fruit flies spend about 13% of their waking life grooming. It also showed that grooming seems to be controlled by two potentially independent internal programs. One program is tied to the internal body clock of the fly, and regulates when the insect grooms during the day. The other commands how long the fly cleans itself, and balances the amount of time spent on grooming with other behaviors. Cleaning oneself is not just important for animals to stay disease-free: it also reflects the general health state of an individual. For example, a loss of grooming is associated with sickness, old age, and, in humans, with mental illness. If scientists can understand how grooming is controlled at the brain and molecular levels, this may give an insight into how these mechanisms relate to diseases. The system created by Qiao, Li et al. could help to make such studies possible.
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- Award ID(s):
- 1656603
- PAR ID:
- 10057868
- Date Published:
- Journal Name:
- eLife
- Volume:
- 7
- ISSN:
- 2050-084X
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.7554/eLife.34497
