skip to main content


Title: Differences in foliar endophyte communities of red alder (Alnus rubra) exposed to varying air pollutant levels
In the Pacific Northwest, Alnus rubra Bong. (red alder) is a common deciduous tree species especially prevalent in riparian corridors and disturbed sites, including metropolitan areas undergoing land use changes and development. Importantly, red alder is also considered a bioindicator for ozone pollution and, like all plants, harbors a diverse endophyte community that may interact with aerial pollutants. In this study, we surveyed foliar fungal endophyte communities (microfungi) in red alder leaves from the metropolitan area of Portland, Oregon, USA, using culture-based techniques, and found that communities differed significantly by site. Our results suggest that the fungal endophyte community composition in red alder leaves may be influenced in part by local air pollution sources, likely in conjunction with other site characteristics. As urban areas expand, more studies should focus on how the urban environment affects plant–microbe community ecology and endophyte–host interactions, as well as on the long-term consequences for other ecosystem processes such as leaf litter decomposition.  more » « less
Award ID(s):
1656057
NSF-PAR ID:
10088868
Author(s) / Creator(s):
; ; ;
Date Published:
Journal Name:
Botany
Volume:
96
Issue:
12
ISSN:
0287-9794
Page Range / eLocation ID:
825-835
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Abstract

    The plant microbiome can affect host function in many ways and characterizing the ecological factors that shape endophytic (microbes living inside host plant tissues) community diversity is a key step in understanding the impacts of environmental change on these communities. Phylogenetic relatedness among members of a community offers a way of quantifying phylogenetic diversity of a community and can provide insight into the ecological factors that shape endophyte microbiomes. We examined the effects of experimental nutrient addition and herbivory exclusion on the phylogenetic diversity of foliar fungal endophyte communities of the grass speciesAndropogon gerardiiat four sites in the Great Plains of the central USA. Using amplicon sequencing, we characterized the effects of fertilization and herbivory on fungal community phylogenetic diversity at spatial scales that spanned within‐host to between sites across the Great Plains. Despite increasing fungal diversity and richness, at larger spatial scales, fungal microbiomes were composed of taxa showing random phylogenetic associations. Phylogenetic diversity did not differ systematically when summed across increasing spatial scales from a few meters within plots to hundreds of kilometers among sites. We observed substantial shifts in composition across sites, demonstrating distinct but similarly diverse fungal communities were maintained within sites across the region. In contrast, at the scale of within leaves, fungal communities tended to be comprised of closely related taxa regardless of the environment, but there were no shifts in phylogenetic composition among communities. We also found that nutrient addition (fertilization) and herbivory have varying effects at different sites. These results suggest that the direction and magnitude of the outcomes of environmental modifications likely depend on the spatial scale considered, and can also be constrained by regional site differences in microbial diversity and composition.

     
    more » « less
  2. Abstract Background

    While a considerable amount of research has explored plant community composition in primary successional systems, little is known about the microbial communities inhabiting these pioneer plant species. Fungal endophytes are ubiquitous within plants, and may play major roles in early successional ecosystems. Specifically, endophytes have been shown to affect successional processes, as well as alter host stress tolerance and litter decomposition dynamics—both of which are important components in harsh environments where soil organic matter is still scarce.

    Results

    To determine possible contributions of fungal endophytes to plant colonization patterns, we surveyed six of the most common woody species on the Pumice Plain of Mount St. Helens (WA, USA; Lawetlat'la in the Cowlitz language; created during the 1980 eruption)—a model primary successional ecosystem—and found low colonization rates (< 15%), low species richness, and low diversity. Furthermore, while endophyte community composition did differ among woody species, we found only marginal evidence of temporal changes in community composition over a single field season (July–September).

    Conclusions

    Our results indicate that even after a post-eruption period of 40 years, foliar endophyte communities still seem to be in the early stages of community development, and that the dominant pioneer riparian species Sitka alder (Alnus viridisssp.sinuata) and Sitka willow (Salix sitchensis) may be serving as important microbial reservoirs for incoming plant colonizers.

     
    more » « less
  3. Foliar chemistry values were obtained from two important native tree species (white oak (Quercus alba L.) and red maple (Acer rubrum L.)) across urban and reference forest sites of three major cities in the eastern United States during summer 2015 (New York, NY (NYC); Philadelphia, PA; and Baltimore, MD). Trees were selected from secondary growth oak-hickory forests found in New York, NY; Philadelphia, PA; and Baltimore, MD, as well as at reference forest sites outside each metropolitan area. In all three metropolitan areas, urban forest patches and references forest sites were selected based on the presence of red maple and white oak canopy dominant trees in patches of at least 1.5 hectares with slopes less than 25%, and well-drained soils of similar soil series within each metropolitan area. Within each city, several forest patches were selected to capture the variation in forest patch site conditions across an individual city. All reference sites were located in protected areas outside of the city and within intermix wildland-urban interface landscapes, in order to target similar contexts of surrounding land use and population density (Martinuzzi et al. 2015). Several reference sites were selected for each city, located within the same protected area considered representative of rural forests of the region. White oaks were at least 38.1 cm diameter at breast height (DBH), red maples were at least 25.4 cm DBH, and all trees were dominant or co-dominant canopy trees. The trees had no major trunk cavities and had crown vigor scores of 1 or 2 (less than 25% overall canopy damage; Pontius & Hallett 2014). From early July to early August 2015, sun leaves were collected from the periphery of the crown of each tree with either a shotgun or slingshot for subsequent analysis to determine differences in foliar chemistry across cities and urban vs. reference forest site types. The data were used to invstigate whether differences in native tree physiology occur between urban and reference forest patches, and whether those differences are site- and species-specific. A complete analysis of these data can be found in: Sonti, NF. 2019. Ecophysiological and social functions of urban forest patches. Ph.D. dissertation. University of Maryland, College Park, MD. 166 p. References: Martinuzzi S, Stewart SI, Helmers DP, Mockrin MH, Hammer RB, Radeloff VC. 2015. The 2010 wildland-urban interface of the conterminous United States. Research Map NRS-8. US Department of Agriculture, Forest Service, Northern Research Station: Newtown Square, PA. Pontius J, Hallett R. 2014. Comprehensive methods for earlier detection and monitoring of forest decline. Forest Science 60(6): 1156-1163. 
    more » « less
  4. Abstract

    Many aspects of the dynamics of tropical fungal endophyte communities are poorly known, including the influence of host taxonomy, host life stage, host defence, and host geographical distance on community assembly and composition. Recent fungal endophyte research has focused onHevea brasiliensisdue to its global importance as the main source of natural rubber. However, almost no data exist on the fungal community harboured within otherHeveaspecies or its sister genusMicrandra. In this study, we expanded sampling to include four additionalHeveaspp. and twoMicrandraspp., as well as two host developmental stages. Through culture-dependent and -independent (metagenomic) approaches, a total of 381 seedlings and 144 adults distributed across three remote areas within the Peruvian Amazon were sampled. Results from both sampling methodologies indicate that host developmental stage had a greater influence in community assemblage than host taxonomy or locality. Based on FunGuild ecological guild assignments, saprotrophic and mycotrophic endophytes were more frequent in adults, while plant pathogens were dominant in seedlings.Trichodermawas the most abundant genus recovered from adult trees whileDiaportheprevailed in seedlings. Potential explanations for that disparity of abundance are discussed in relation to plant physiological traits and community ecology hypotheses.

     
    more » « less
  5. Abstract

    Foliar fungal endophytes are ubiquitous plant symbionts that can affect plant growth and reproduction via their roles in pathogen and stress tolerance, as well as plant hormonal signaling. Despite their importance, we have a limited understanding of how foliar fungal endophytes respond to varying environmental conditions such as nutrient inputs. The responses of foliar fungal endophyte communities to increased nutrient deposition may be mediated by the simultaneous effects on within‐host competition as well as the indirect impacts of altered host population size, plant productivity, and plant community diversity and composition. Here, we leveraged a 7‐yr experiment manipulating nitrogen, phosphorus, potassium, and micronutrients to investigate how nutrient‐induced changes to plant diversity, plant productivity, and plant community composition relate to changes in foliar fungal endophyte diversity and richness in a focal native grass host,Andropogon gerardii. We found limited evidence of direct effects of nutrients on endophyte diversity. Instead, the effects of nutrients on endophyte diversity appeared to be mediated by accumulation of plant litter and plant diversity loss. Specifically, nitrogen addition is associated with a 40% decrease in plant diversity and an 11% decrease in endophyte richness. Although nitrogen, phosphorus, and potassium addition increased aboveground live biomass and decreased relativeAndropogoncover, endophyte diversity did not covary with live plant biomass orAndropogoncover. Our results suggest that fungal endophyte diversity within this focal host is determined in part by the diversity of the surrounding plant community and its potential impact on immigrant propagules and dispersal dynamics. Our results suggest that elemental nutrients reduce endophyte diversity indirectly via impacts on the local plant community, not direct response to nutrient addition. Thus, the effects of global change drivers, such as nutrient deposition, on characteristics of host populations and the diversity of their local communities are important for predicting the response of symbiont communities in a changing global environment.

     
    more » « less