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1. Modeling the physiology of the aquatic temnospondyl <i>Archegosaurusdecheni</i> from the early Permian of Germany

   https://doi.org/10.5194/fr-20-105-2017  

   Witzmann, Florian; Brainerd, Elizabeth (January 2017, Fossil Record)

   Abstract. Physiological aspects like heat balance, gas exchange, osmoregulation, and digestion of the early Permian aquatic temnospondyl Archegosaurus decheni, which lived in a tropical freshwater lake, are assessed based on osteological correlates of physiologically relevant soft-tissue organs and by physiological estimations analogous to air-breathing fishes. Body mass (M) of an adult Archegosaurus with an overall body length of more than 1m is estimated as 7kg using graphic double integration. Standard metabolic rate (SMR) at 20°C (12kJh⁻¹) and active metabolic rate (AMR) at 25°C (47kJh⁻¹) were estimated according to the interspecific allometry of metabolic rate (measured as oxygen consumption) of all fish (V_O2 = 4. 8M^0. 88) and form the basis for most of the subsequent estimations. Archegosaurus is interpreted as a facultative air breather that got O₂ from the internal gills at rest in well-aerated water but relied on its lungs for O₂ uptake in times of activity and hypoxia. The bulk of CO₂ was always eliminated via the gills. Our estimations suggest that if Archegosaurus did not have gills and released 100% CO₂ from its lungs, it would have to breathe much more frequently to release enough CO₂ relative to the lung ventilation required for just O₂ uptake. Estimations of absorption and assimilation in the digestive tract of Archegosaurus suggest that an adult had to eat about six middle-sized specimens of the acanthodian fish Acanthodes (ca. 8cm body length) per day to meet its energy demands. Archegosaurus is regarded as an ammonotelic animal that excreted ammonia (NH₃) directly to the water through the gills and the skin, and these diffusional routes dominated nitrogen excretion by the kidneys as urine. Osmotic influx of water through the gills had to be compensated for by production of dilute, hypoosmotic urine by the kidneys. Whereas Archegosaurus has long been regarded as a salamander-like animal, there is evidence that its physiology was more fish- than tetrapod-like in many respects. 

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2. Absorption of volatile organic compounds (VOCs) by polymer tubing: implications for indoor air and use as a simple gas-phase volatility separation technique

   https://doi.org/10.5194/amt-17-1545-2024  

   Morris, Melissa A; Pagonis, Demetrios; Day, Douglas A; de_Gouw, Joost A; Ziemann, Paul J; Jimenez, Jose L (January 2024, Atmospheric Measurement Techniques)

   Abstract. Previous studies have demonstrated volatility-dependent absorption of gas-phase volatile organic compounds (VOCs) to Teflon and other polymers. Polymer–VOC interactions are relevant for atmospheric chemistry sampling, as gas–wall partitioning in polymer tubing can cause delays and biases during measurements. They are also relevant to the study of indoor chemistry, where polymer-based materials are abundant (e.g., carpets and paints). In this work, we quantify the absorptive capacities of multiple tubing materials, including four nonconductive polymers (important for gas sampling and indoor air quality), four electrically conductive polymers and two commercial steel coatings (for gas and particle sampling). We compare their performance to previously characterized materials. To quantify the absorptive capacities, we expose the tubing to a series of ketones in the volatility range 104–109 µg m−3 and monitor transmission. For slow-diffusion polymers (e.g., perfluoroalkoxy alkane (PFA) Teflon and nylon), absorption is limited to a thin surface layer, and a single-layer absorption model can fit the data well. For fast-diffusion polymers (e.g., polyethylene and conductive silicone), a larger depth of the polymer is available for diffusion, and a multilayer absorption model is needed. The multilayer model allows fitting solid-phase diffusion coefficients for different materials, which range from 4×10-9 to 4×10-7 cm2 s−1. These diffusion coefficients are ∼ 8 orders of magnitude larger than literature values for fluorinated ethylene propylene (FEP) Teflon film. This enormous difference explains the differences in VOC absorption measured here. We fit an equivalent absorptive mass (CW, µg m−3) for each absorptive material. We found PFA to be the least absorptive, with CW ∼ 105 µg m−3, and conductive silicone to be the most absorptive, with CW ∼ 1013 µg m−3. PFA transmits VOCs easily and intermediate-volatility species (IVOCs) with quantifiable delays. In contrast, conductive silicone tubing transmits only the most volatile VOCs, denuding all lower-volatility species. Semi-volatile species (SVOCs) are very difficult to sample quantitatively through any tubing material. We demonstrate a system combining several slow- and fast-diffusion tubing materials that can be used to separate a mixture of VOCs into volatility classes. New conductive silicone tubing contaminated the gas stream with siloxanes, but this effect was reduced 10 000-fold for aged tubing, while maintaining the same absorptive properties. SilcoNert (tested in this work) and Silonite (tested in previous work) steel coatings showed gas transmission that was almost as good as PFA, but since they undergo adsorption, their delay times may be humidity- and concentration-dependent. 

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3. Aphotic N₂ fixation along an oligotrophic to ultraoligotrophic transect in the western tropical South Pacific Ocean

   https://doi.org/10.5194/bg-15-3107-2018  

   Benavides, Mar; Shoemaker, Katyanne M.; Moisander, Pia H.; Niggemann, Jutta; Dittmar, Thorsten; Duhamel, Solange; Grosso, Olivier; Pujo-Pay, Mireille; Hélias-Nunige, Sandra; Fumenia, Alain; et al (January 2018, Biogeosciences)

   Abstract. The western tropical South Pacific (WTSP) Ocean has been recognized as a global hot spot of dinitrogen (N₂) fixation. Here, as in other marine environments across the oceans, N₂ fixation studies have focused on the sunlit layer. However, studies have confirmed the importance of aphotic N₂ fixation activity, although until now only one had been performed in the WTSP. In order to increase our knowledge of aphotic N₂ fixation in the WTSP, we measured N₂ fixation rates and identified diazotrophic phylotypes in the mesopelagic layer along a transect spanning from New Caledonia to French Polynesia. Because non-cyanobacterial diazotrophs presumably need external dissolved organic matter (DOM) sources for their nutrition, we also identified DOM compounds using Fourier transform ion cyclotron resonance mass spectrometry (FTICRMS) with the aim of searching for relationships between the composition of DOM and non-cyanobacterial N₂ fixation in the aphotic ocean. N₂ fixation rates were low (average 0.63±0.07nmolNL⁻¹d⁻¹) but consistently detected across all depths and stations, representing ∼ 6–88% of photic N₂ fixation. N₂ fixation rates were not significantly correlated with DOM compounds. The analysis of nifH gene amplicons revealed a wide diversity of non-cyanobacterial diazotrophs, mostly matching clusters 1 and 3. Interestingly, a distinct phylotype from the major nifH subcluster 1G dominated at 650dbar, coinciding with the oxygenated Subantarctic Mode Water (SAMW). This consistent pattern suggests that the distribution of aphotic diazotroph communities is to some extent controlled by water mass structure. While the data available are still too scarce to elucidate the distribution and controls of mesopelagic non-cyanobacterial diazotrophs in the WTSP, their prevalence in the mesopelagic layer and the consistent detection of active N₂ fixation activity at all depths sampled during our study suggest that aphotic N₂ fixation may contribute significantly to fixed nitrogen inputs in this area and/or areas downstream of water mass circulation. 

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4. Airborne and ground-based observations of ammonium-nitrate-dominated aerosols in a shallow boundary layer during intense winter pollution episodes in northern Utah

   https://doi.org/10.5194/acp-18-17259-2018  

   Franchin, Alessandro; Fibiger, Dorothy L.; Goldberger, Lexie; McDuffie, Erin E.; Moravek, Alexander; Womack, Caroline C.; Crosman, Erik T.; Docherty, Kenneth S.; Dube, William P.; Hoch, Sebastian W.; et al (January 2018, Atmospheric Chemistry and Physics)

   Abstract. Airborne and ground-based measurements of aerosol concentrations, chemicalcomposition, and gas-phase precursors were obtained in three valleys innorthern Utah (USA). The measurements were part of the Utah Winter FineParticulate Study (UWFPS) that took place in January–February 2017. Totalaerosol mass concentrations of PM₁ were measured from a Twin Otteraircraft, with an aerosol mass spectrometer (AMS). PM₁ concentrationsranged from less than 2µgm⁻³ during clean periods to over100µgm⁻³ during the most polluted episodes, consistent withPM_2.5 total mass concentrations measured concurrently at groundsites. Across the entire region, increases in total aerosol mass above∼2µgm⁻³ were associated with increases in theammonium nitrate mass fraction, clearly indicating that the highest aerosolmass loadings in the region were predominantly attributable to an increase inammonium nitrate. The chemical composition was regionally homogenous fortotal aerosol mass concentrations above 17.5µgm⁻³, with 74±5% (average±standard deviation) ammonium nitrate, 18±3%organic material, 6±3% ammonium sulfate, and 2±2%ammonium chloride. Vertical profiles of aerosol mass and volume in the regionshowed variable concentrations with height in the polluted boundary layer.Higher average mass concentrations were observed within the first few hundredmeters above ground level in all three valleys during pollution episodes. Gas-phase measurements of nitric acid (HNO₃) and ammonia (NH₃) duringthe pollution episodes revealed that in the Cache and Utah valleys, partitioningof inorganic semi-volatiles to the aerosol phase was usually limited by theamount of gas-phase nitric acid, with NH₃ being in excess. The inorganicspecies were compared with the ISORROPIA thermodynamic model. Total inorganicaerosol mass concentrations were calculated for various decreases in totalnitrate and total ammonium. For pollution episodes, our simulations of a50% decrease in total nitrate lead to a 46±3% decrease in totalPM₁ mass. A simulated 50% decrease in total ammonium leads to a36±17%µgm⁻³ decrease in total PM₁ mass, over the entirearea of the study. Despite some differences among locations, ourresults showed a higher sensitivity to decreasing nitric acid concentrationsand the importance of ammonia at the lowest total nitrate conditions. In theSalt Lake Valley, both HNO₃ and NH₃ concentrations controlledaerosol formation. 

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5. Dynamics and controls of heterotrophic prokaryotic production in the western tropical South Pacific Ocean: links with diazotrophic and photosynthetic activity

   https://doi.org/10.5194/bg-15-2669-2018  

   Van Wambeke, France; Gimenez, Audrey; Duhamel, Solange; Dupouy, Cécile; Lefevre, Dominique; Pujo-Pay, Mireille; Moutin, Thierry (January 2018, Biogeosciences)

   Abstract. Heterotrophic prokaryotic production (BP) was studied in the western tropical South Pacific (WTSP) using the leucine technique, revealing spatial and temporal variability within the region. Integrated over the euphotic zone, BP ranged from 58 to 120mg Cm⁻²d⁻¹ within the Melanesian Archipelago, and from 31 to 50mg Cm⁻²d⁻¹ within the western subtropical gyre. The collapse of a bloom was followed during 6 days in the south of Vanuatu using a Lagrangian sampling strategy. During this period, rapid evolution was observed in the three main parameters influencing the metabolic state: BP, primary production (PP) and bacterial growth efficiency. With N₂ fixation being one of the most important fluxes fueling new production, we explored relationships between BP, PP and N₂ fixation rates over the WTSP. The contribution of N₂ fixation rates to bacterial nitrogen demand ranged from 3 to 81%. BP variability was better explained by the variability of N₂ fixation rates than by that of PP in surface waters of the Melanesian Archipelago, which were characterized by N-depleted layers and low DIP turnover times (T_DIP&lt;100h). This is consistent with the fact that nitrogen was often one of the main factors controlling BP on short timescales, as shown using enrichment experiments, followed by dissolved inorganic phosphate (DIP) near the surface and labile organic carbon deeper in the euphotic zone. However, BP was more significantly correlated with PP, but not with N₂ fixation rates where DIP was more available (T_DIP&gt;100h), deeper in the Melanesian Archipelago, or within the entire euphotic zone in the subtropical gyre. The bacterial carbon demand to gross primary production ratio ranged from 0.75 to 3.1. These values are discussed in the framework of various assumptions and conversion factors used to estimate this ratio, including the methodological errors, the daily variability of BP, the bacterial growth efficiency and one bias so far not considered: the ability for Prochlorococcus to assimilate leucine in the dark. 

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