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1. Modulation of Turbulent Flow by Surrogate Asian Carp Eggs

   https://doi.org/10.1061/9780784482971.013  

   Li, Yilan; Bennett, Sean; Zhu, Zhenduo (May 2020, World Environmental and Water Resources Congress 2020)

   null (Ed.)

   In geophysical flows, the presence of sediment in suspension and transport can play an important role in modifying the turbulent properties of the carrier fluid. Much research has focused on the effects of relatively small diameter (less than 1 mm) quartz-density (2.65 g/cm3) particles on turbulent flow. Asian carp is a wide-spread invasive aquatic species in the U.S., causing severe ecological problems in rivers and lakes. Unlike sediment, Asian carp eggs are semi-buoyant particles (~1.05 g/cm3 when initially spawned and ~1.00 g/cm3 in the post-water-hardening period) whose diameter stabilizes to approximately 5 mm. This paper examines how turbulent flow is affected by the presence of particles serving as surrogates for Asian carp eggs as a function of turbulence intensity. Experiments were conducted in a mixing box with the oscillating grid placed near the bottom boundary, and 2D PIV was used to quantify the turbulent characteristics of the carrier fluid. Five paired experiments with and without Asian carp egg surrogate particles were conducted. Results show that under different grid oscillation frequencies (2 to 6 Hz), the mean kinetic energy of the carrier fluid decreased slightly in the presence of the particles, but the turbulent kinetic energy of the fluid did not change appreciably. This suggests strongly that Asian carp eggs in suspension do not modify turbulence intensity of the carrier fluid. These experimental results provide important insight into the entrainment, transport, and deposition of Asian carp eggs, which can inform models to predict the future spread of this invasive species. 

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2. CARP: Compression Through Adaptive Recursive Partitioning for Multi-Dimensional Images

   Liu, Rongjie; Li, Meng; Ma, Li (June 2020, IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR))

   Fast and effective image compression for multi- dimensional images has become increasingly important for efficient storage and transfer of massive amounts of high- resolution images and videos. Desirable properties in com- pression methods include (1) high reconstruction quality at a wide range of compression rates while preserving key local details, (2) computational scalability, (3) applicability to a variety of different image/video types and of different dimen- sions, and (4) ease of tuning. We present such a method for multi-dimensional image compression called Compression via Adaptive Recursive Partitioning (CARP). CARP uses an optimal permutation of the image pixels inferred from a Bayesian probabilistic model on recursive partitions of the image to reduce its effective dimensionality, achieving a par- simonious representation that preserves information. CARP uses a multi-layer Bayesian hierarchical model to achieve self-tuning and regularization to avoid overfitting—resulting in one single parameter to be specified by the user to achieve the desired compression rate. Extensive numerical experi- ments using a variety of datasets including 2D ImageNet, 3D medical image, and real-life YouTube and surveillance videos show that CARP dominates the state-of-the-art com- pression approaches—including JPEG, JPEG2000, MPEG4, and a neural network-based method—for all of these dif- ferent image types and often on nearly all of the individual images. 

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3. Identification of Bighead Carp and Silver Carp early-life environments and inferring Lock and Dam 19 passage in the Upper Mississippi River: insights from otolith chemistry

   https://doi.org/10.1007/s10530-018-1881-2  

   Whitledge, Gregory W.; Knights, Brent; Vallazza, Jon; Larson, James; Weber, Michael J.; Lamer, James T.; Phelps, Quinton E.; Norman, Jacob D. (March 2019, Biological Invasions)
4. Receptor cavity-based screening reveals potential allosteric modulators of gonadotropin receptors in carp ( Cyprinus carpio )

   https://doi.org/10.1101/2023.10.12.562013  

   Atre, Ishwar; Hollander-Cohen, Lian; Lankry, Hodaya; Levavi-Sivan, Berta (October 2023, bioRxiv)

   Abstract The gonadotropins follicle stimulating hormone (FSH) and luteinizing hormone (LH) are key regulators of sexual development and the reproductive cycle in vertebrates. Unlike most G protein-coupled receptors (GPCR), the FSHR and LHR have large extracellular domains containing multiple leucine-rich repeats, which leads to an elaborate mechanism of receptor activation via orthosteric sites that is difficult to manipulate synthetically. To bypass the orthosteric mechanism, in this study using carp as a model organism we identified allosteric sites capable of receptor activation on the transmembrane domain, which are spatially separated from the orthosteric sites. We have further generated pharmacophore hypothesis based on the structural motifs and exposed residues of these cavities. Using available online small compound libraries consisting of >70000 small molecules, we have thereon used receptor cavity-based hypothesis and other screening stages to identify potential modulators of the allosteric binding site on the carp FSHR and LHRin-silico. We then examined byin vitrotransactivation assay the effect of four candidate compounds on FSHR and LHR, as compared to the activity of native ligands. Our results reveal both specific and dual effective allosteric modulators for FSHR and LHR, demonstrating the potential of our approach for efficient pharmacophore-based screening. 

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5. Comprehensive data and workflow for mapping global proteome and post-translational modifications in Indian Major Carp, Labeo rohita

   https://doi.org/10.1016/j.dib.2022.108746  

   Nissa, Mehar Un; Banerjee, Anwesha; Goswami, Mukunda; Srivastava, Sanjeeva (December 2022, Data in Brief)