skip to main content

Attention:

The NSF Public Access Repository (PAR) system and access will be unavailable from 11:00 PM ET on Thursday, January 16 until 2:00 AM ET on Friday, January 17 due to maintenance. We apologize for the inconvenience.


Title: Rheology of bacterial suspensions under confinement
As a paradigmatic model of active fluids, bacterial suspensions show intriguing rheological responses drastically different from their counterpart colloidal suspensions. Although the flow of bulk bacterial suspensions has been extensively studied, the rheology of bacterial suspensions under confinement has not been experimentally explored. Here, using a microfluidic viscometer, we systematically measure the rheology of dilute Escherichia coli suspensions under different degrees of confinement. Our study reveals a strong confinement effect: the viscosity of bacterial suspensions decreases substantially when the confinement scale is comparable or smaller than the run length of bacteria. Moreover, we also investigate the microscopic dynamics of bacterial suspensions including velocity profiles, bacterial density distributions, and single bacterial dynamics in shear flows. These measurements allow us to construct a simple heuristic model based on the boundary layer of upstream swimming bacteria near confining walls, which qualitatively explains our experimental observations. Our study sheds light on the influence of the boundary layer of collective bacterial motions on the flow of confined bacterial suspensions. Our results provide a benchmark for testing different rheological models of active fluids and are useful for understanding the transport of microorganisms in confined geometries.  more » « less
Award ID(s):
1702352
PAR ID:
10099041
Author(s) / Creator(s):
; ;
Date Published:
Journal Name:
Rheologica Acta
ISSN:
0035-4511
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Bacterial suspensions—a premier example of active fluids—show an unusual response to shear stresses. Instead of increasing the viscosity of the suspending fluid, the emergent collective motions of swimming bacteria can turn a suspension into a superfluid with zero apparent viscosity. Although the existence of active superfluids has been demonstrated in bulk rheological measurements, the microscopic origin and dynamics of such an exotic phase have not been experimentally probed. Here, using high-speed confocal rheometry, we study the dynamics of concentrated bacterial suspensions under simple planar shear. We find that bacterial superfluids under shear exhibit unusual symmetric shear bands, defying the conventional wisdom on shear banding of complex fluids, where the formation of steady shear bands necessarily breaks the symmetry of unsheared samples. We propose a simple hydrodynamic model based on the local stress balance and the ergodic sampling of nonequilibrium shear configurations, which quantitatively describes the observed symmetric shear-banding structure. The model also successfully predicts various interesting features of swarming vortices in stationary bacterial suspensions. Our study provides insights into the physical properties of collective swarming in active fluids and illustrates their profound influences on transport processes. 
    more » « less
  2. Herein, we have employed a supervised learning approach combined with Core-Modified Dissipative Particle Dynamics Simulations (CM-DPD) in order to develop and design a reliable physics-based computational model that will be used in studying confined flow of suspensions. CM-DPD was recently developed and has shown promising performance in capturing rheological behavior of colloidal suspensions; however, the model becomes problematic when the flow of the material is confined between two walls. Wall-penetration by the particles is an unphysical phenomenon that occurs in coarse-grained simulations such as Dissipative Particle Dynamics (DPD) that mostly rely on soft inter-particle interactions. Different solutions to this problem have been proposed in the literature; however, no reports have been given on how to deal with walls using CM-DPD. Due to complexity of interactions and system parameters, designing a realistic simulation model is not a trivial task. Therefore, in this work we have trained a Random Forest (RF) for predicting wall penetration as we vary input parameters such as interaction potentials, flow rate, volume fraction of colloidal particles, and confinement ratio. The RF predictions were compared against simulation tests, and a sufficiently high accuracy and low errors were obtained. This study shows the viability and potentiality of ML combined with DPD to perform parametric studies in complex fluids. 
    more » « less
  3. Abstract Bacteria are among the oldest and most abundant species on Earth. Bacteria successfully colonize diverse habitats and play a significant role in the oxygen, carbon, and nitrogen cycles. They also form human and animal microbiota and may become sources of pathogens and a cause of many infectious diseases. Suspensions of motile bacteria constitute one of the most studied examples of active matter: a broad class of non-equilibrium systems converting energy from the environment (e.g., chemical energy of the nutrient) into mechanical motion. Concentrated bacterial suspensions, often termed active fluids, exhibit complex collective behavior, such as large-scale turbulent-like motion (so-called bacterial turbulence) and swarming. The activity of bacteria also affects the effective viscosity and diffusivity of the suspension. This work reports on the progress in bacterial active matter from the physics viewpoint. It covers the key experimental results, provides a critical assessment of major theoretical approaches, and addresses the effects of visco-elasticity, liquid crystallinity, and external confinement on collective behavior in bacterial suspensions. 
    more » « less
  4. Drying of bacterial suspensions is frequently encountered in a plethora of natural and engineering processes. However, the evaporation-driven mechanical instabilities of dense consolidating bacterial suspensions have not been explored heretofore. Here, we report the formation of two different crack patterns of drying suspensions of Escherichia coli ( E. coli ) with distinct motile behaviors. Circular cracks are observed for wild-type E. coli with active swimming, whereas spiral-like cracks form for immotile bacteria. Using the elastic fracture mechanics and the poroelastic theory, we show that the formation of the circular cracks is determined by the tensile nature of the radial drying stress once the cracks are initiated by the local order structure of bacteria due to their collective swimming. Our study demonstrates the link between the microscopic swimming behaviors of individual bacteria and the mechanical instabilities and macroscopic pattern formation of drying bacterial films. The results shed light on the dynamics of active matter in a drying process and provide useful information for understanding various biological processes associated with drying bacterial suspensions. 
    more » « less
  5. Confinement can be used to systematically tame turbulent dynamics occurring in active fluids. Although periodic channels are the simplest geometries to study confinement numerically, the corresponding experimental realizations require closed racetracks. Here, we computationally study 2D active nematics confined to such a geometry—an annulus. By systematically varying the annulus inner radius and channel width, we bridge the behaviors observed in the previously studied asymptotic limits of the annulus geometry: a disk and an infinite channel. We identify new steady-state behaviors, which reveal the influence of boundary curvature and its interplay with confinement. We also show that, below a threshold inner radius, the dynamics are insensitive to the presence of the inner hole. We explain this insensitivity through a simple scaling analysis. Our work sheds further light on design principles for using confinement to control the dynamics of active nematics. 
    more » « less