An official website of the United States government
Novel near-infrared ratiometric molecules (probes A and B) produced by linking formyl-functionalized xanthene and methoxybenzene moieties, respectively, onto a xanthene-hemicyanine framework are detailed. Probe A exhibited a primary absorption peak at 780 nm and a shoulder peak at 730 nm and exhibited fluorescence at 740 nm↓ (signifies a downward shift in intensity upon acidification) in a pH 9.3 buffer and 780 nm↑ at pH 2.8 under excitation at 700 nm. Probe B featured absorptions at 618 and 668 nm at pH 3.2 and at 717 nm at pH 8.6, and fluorescence at 693 nm↑ at pH 3.2 and at 739 nm↓ at pH 8.6, in mostly the red to near-IR region. The ratiometric changes in the intensity of the fluorescent absorptions were reversed between A and B upon acidification as indicated by the arrows. Theoretical calculations confirmed that there were slight changes in conformation between probes and the protonated molecules, suggesting that the changes in emission spectra were due mostly to conjugation effects. Calculations at the APFD/6-311+g(d,p) level with a solvent described by the polarizable continuum model resulted in pKa values for A at 6.33 and B at 6.41, in good agreement with the experimentally determined value of 6.97 and an average of 6.40, respectively. The versatilities of the probes were demonstrated in various experimental contexts, including the effective detection of mitochondrial pH fluctuations. Live cell experiments involving exposure to different pH buffers in the presence of H+ ionophores, monitoring mitophagy processes during cell starvation, studying hypoxia induced by CoCl2 treatment, and investigating responses to various oxidative stresses are detailed. Our findings highlight the potential of attaching xanthene and methoxybenzaldehyde groups onto xanthene-hemicyanine structures as versatile tools for monitoring pH changes in a variety of cellular environments and processes.
more »
« less
Using Uric Acid for Singlet Oxygen Detection in a Laser Virus Inactivation Experiment
We demonstrate the generation of singlet oxygen in a laser virus inactivation experiment using a low power diode light at 405 nm by detecting photobleaching of the absorption peak of uric acid at 294 nm.
more »
« less
- Award ID(s):
- 1831332
- PAR ID:
- 10101298
- Date Published:
- Journal Name:
- Biophotonics Congress: Optics in the Life Sciences Congress 2019 (BODA,BRAIN,NTM,OMA,OMP), OSA Technical Digest (Optical Society of America, 2019)
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Despite their versatile synthetic utility, vinyl azides have complex and poorly understood photochemistry. To address this, we investigated the photoreactivity of 1-azidostyrene 1 and 3-phenyl-2H-azirine 2 in solution and cryogenic matrices. In argon matrices, irradiation of 1 at 254 nm yielded 2, phenyl nitrile ylide 3, and N-phenyl ketenimine 4, whereas irradiation at wavelengths above 300 nm produced only 2 and 4. Similarly, irradiation of 1 in 2-methyltetrahydrofuran (mTHF) glass at 77 K mainly yielded absorption corresponding to the formation of 2 (λmax ~ 252 nm). In contrast, irradiation of 2 at wavelengths above 300 nm in Argon matrices yielded no photoproducts, whereas irradiation at 254 nm resulted in the formation of 3. Furthermore, femto- and nanosecond transient absorption and laser flash photolysis were performed to ascertain the transient species and reactive intermediates formed during the photochemical transformations of 1 and 2. The ultrafast transient absorption spectroscopy of 1 resulted in a transient absorption band centered at ca. 472 nm with a time constant τ ~ 22 ps, which was assigned to the first singlet excited state (S1) of 1. The nano-second flash photolysis of 1 (308 nm laser) generated 2 within the laser pulse (~17 ns), and subsequently 2 is excited to yield triplet vinylnitrene 31N with an absorption centered at ~ 440 nm. In contrast, the nano-second laser flash photolysis of 2 with 266 nm laser produced a weak absorption corresponding to 3, whereas 308 nm laser yielded absorption due to triplet vinylnitrene 31N (λmax ~ 440 nm). These findings demonstrate that the direct irradiation of 1 populates S1 of 1, which does not intersystem cross to form 31N, but instead decays to yield 2. Density functional theory calculations supported the characteristics of the excited states and reactive intermediates formed upon irradiation of 1 and 2.more » « less
-
Measurements of three-photon action cross-sections for fluorescein (dissolved in water, pH ∼11.5) are presented in the excitation wavelength range from 1154 to 1500 nm in ∼50 nm steps. The excitation source is a femtosecond wavelength tunable non-collinear optical parametric amplifier, which has been spectrally filtered with 50 nm full width at half maximum band pass filters. Cube-law power dependance is confirmed at the measurement wavelengths. The three-photon excitation spectrum is found to differ from both the one- and two-photon excitation spectra. The three-photon action cross-section at 1154 nm is more than an order of magnitude larger than those at 1450 and 1500 nm (approximately three times the wavelength of the one-photon excitation peak), which possibly indicates the presence of resonance enhancement.more » « less
-
Optical transformation of riverine colored dissolved organic matter during salt-induced flocculationAbstract Flocculation of riverine dissolved organic matter (DOM) in estuaries is crucial for transforming and removing terrestrial carbon inputs across the land-to-ocean aquatic continuum. We measured variations in chromophoric DOM (CDOM) absorption and fluorescence of riverine DOM through mixing experiments conducted across various seasons and environments, identifying patterns in salt-induced flocculation. Our observations show a systematic reduction in CDOM absorption in the 250–450 nm range at salinity 2, with a sharper decrease at higher wavelengths. Flocculation led to decreased relative fluorescence intensity below emission wavelength of 360 nm and an increased intensity at higher emission wavelengths across the excitation spectrum measured (250–450 nm). We introduce a new metric,red shift ratio, a fluorescence-based metric calculated as the ratio of emission intensity at 300–350 nm to that at 360–500 nm, at excitation wavelengths between 250 and 300 nm, for detecting flocculation-induced changes in CDOM across estuarine systems. The observed sensitivity of CDOM to flocculation in low salinities challenges its use as a conservative tracer in coastal gradients, suggesting that recalibrations are required for remote sensing algorithms and carbon flux estimations across land-sea continuum, particularly in systems with similar characteristics.more » « less
-
Two distinct ultra-thin Ge1−xSnx (x ≤ 0.1) epilayers were deposited on (001) Si substrates at 457 and 313 °C through remote plasma-enhanced chemical vapor deposition. These films are considered potential initiation layers for synthesizing thick epitaxial GeSn films. The GeSn film deposited at 313 °C has a thickness of 10 nm and exhibits a highly epitaxial continuous structure with its lattice being compressed along the interface plane to coherently match Si without mismatch dislocations. The GeSn film deposited at 457 °C exhibits a discrete epitaxial island-like morphology with a peak height of ∼30 nm and full-width half maximum (FWHM) varying from 20 to 100 nm. GeSn islands with an FWHM smaller than 20 nm are defect free, whereas those exceeding 25 nm encompass nanotwins and/or stacking faults. The GeSn islands form two-dimensional modulated superlattice structures at the interface with Si. The GeSn film deposited at 457 °C possesses a lower Sn content compared to the one deposited at lower temperature. The potential impact of using these two distinct ultra-thin layers as initiation layers for the direct growth of thicker GeSn epitaxial films on (001) Si substrates is discussed.more » « less
- Free Publicly Accessible Full Text
-
Accepted Manuscript1.0
- Conference Paper:
- The DOI is not currently available.
