A mouse’s nose contains over 10 million receptor neurons divided into about 1,000 different types, which detect airborne chemicals – called odorants – that make up smells. Each odorant activates many different receptor types. And each receptor type responds to many different odorants. To identify a smell, the brain must therefore consider the overall pattern of activation across all receptor types. Individual receptor neurons in the mammalian nose live for about 30 days, before new cells replace them. The entire population of odorant receptor neurons turns over every few weeks, even in adults. Studies have shown that some types of these receptor neurons are used more often than others, depending on the species, and are therefore much more abundant. Moreover, the usage patterns of different receptor types can also change when individual animals are exposed to different smells. Teşileanu et al. set out to develop a computer model that can explain these observations. The results revealed that the nose adjusts its odorant receptor neurons to provide the brain with as much information as possible about typical smells in the environment. Because each smell consists of multiple odorants, each odorant is more likely to occur alongside certain others. For example, the odorants that make up the scent of a flower are more likely to occur together than alongside the odorants in diesel. The nose takes advantage of these relationships by adjusting the abundance of the receptor types in line with them. Teşileanu et al. show that exposure to odorants leads to reproducible increases or decreases in different receptor types, depending on what would provide the brain with most information. The number of odorant receptor neurons in the human nose decreases with time. The current findings could help scientists understand how these changes affect our sense of smell as we age. This will require collaboration between experimental and theoretical scientists to measure the odors typical of our environments, and work out how our odorant receptor neurons detect them.
more »
« less
Competitive binding predicts nonlinear responses of olfactory receptors to complex mixtures
In color vision, the quantitative rules for mixing lights to make a target color are well understood. By contrast, the rules for mixing odorants to make a target odor remain elusive. A solution to this problem in vision relied on characterizing receptor responses to different wavelengths of light and subsequently relating these responses to perception. In olfaction, experimentally measuring receptor responses to a representative set of complex mixtures is intractable due to the vast number of possibilities. To meet this challenge, we develop a biophysical model that predicts mammalian receptor responses to complex mixtures using responses to single odorants. The dominant nonlinearity in our model is competitive binding (CB): Only one odorant molecule can attach to a receptor binding site at a time. This simple framework predicts receptor responses to mixtures of up to 12 monomolecular odorants to within 15% of experimental observations and provides a powerful method for leveraging limited experimental data. Simple extensions of our model describe phenomena such as synergy, overshadowing, and inhibition. We demonstrate that the presence of such interactions can be identified via systematic deviations from the competitive-binding model.
more »
« less
- Award ID(s):
- 1734030
- PAR ID:
- 10103585
- Publisher / Repository:
- Proceedings of the National Academy of Sciences
- Date Published:
- Journal Name:
- Proceedings of the National Academy of Sciences
- ISSN:
- 0027-8424
- Page Range / eLocation ID:
- Article No. 201813230
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
DNA aptamers are short nucleotide oligomers selected to bind a target ligand with affinity and specificity rivaling that of antibodies. These remarkable features recommend aptamers as candidates for analytical and therapeutic applications that traditionally use antibodies as biorecognition elements. Numerous traditional and emerging analytical techniques have been proposed and successfully implemented to utilize aptamers for sensing purposes. In this work, we exploited the analytical capabilities offered by the kinetic exclusion assay technology to measure the affinity of fluorescent aptamers for their thrombin target and quantify the concentration of analyte in solution. Standard binding curves constructed by using equilibrated mixtures of aptamers titrated with thrombin were fitted with a 1:1 binding model and provided an effective Kd of the binding in the sub-nanomolar range. However, our experimental results suggest that this simple model does not satisfactorily describe the binding process; therefore, the possibility that the aptamer is composed of a mixture of two or more distinct Kd populations is discussed. The same standard curves, together with a four-parameter logistic equation, were used to determine “unknown” concentrations of thrombin in mock samples. The ability to identify and characterize complex binding stoichiometry, together with the determination of target analyte concentrations in the pM–nM range, supports the adoption of this technology for kinetics, equilibrium, and analytical purposes by employing aptamers as biorecognition elements.more » « less
-
Rueppell, Olav (Ed.)Animals use odors in many natural contexts, for example, for finding mates or food, or signaling danger. Most analyses of natural odors search for either the most meaningful components of a natural odor mixture, or they use linear metrics to analyze the mixture compositions. However, we have recently shown that the physical space for complex mixtures is ‘hyperbolic’, meaning that there are certain combinations of variables that have a disproportionately large impact on perception and that these variables have specific interpretations in terms of metabolic processes taking place inside the flower and fruit that produce the odors. Here we show that the statistics of odorants and odorant mixtures produced by inflorescences ( Brassica rapa ) are also better described with a hyperbolic rather than a linear metric, and that combinations of odorants in the hyperbolic space are better predictors of the nectar and pollen resources sought by bee pollinators than the standard Euclidian combinations. We also show that honey bee and bumble bee antennae can detect most components of the B . rapa odor space that we tested, and the strength of responses correlates with positions of odorants in the hyperbolic space. In sum, a hyperbolic representation can be used to guide investigation of how information is represented at different levels of processing in the CNS.more » « less
-
The adsorption of foulants on photocatalytic nanoparticles can suppress their reactivity in water treatment applications by scavenging reactive species at the photocatalyst surface, screening light, or competing for surface sites. These inhibitory effects are commonly modeled using the Langmuir-Hinshelwood model, assuming that adsorbed layer compositions follow Langmuirian (equilibrium) competitive adsorption. However, this assumption has not been evaluated in complex mixtures of foulants. This study evaluates the photoreactivity of titanium dioxide (TiO2) nanoparticles toward a target compound, phenol, in the presence of two classes of foulants ─ natural organic matter (NOM) and a protein, bovine serum albumin (BSA) ─ and mixtures of the two. Langmuir adsorption models predict that BSA should strongly influence the nanoparticle photoreactivity because of its higher adsorption affinity relative to phenol and NOM. However, model evaluation of the experimental phenol decay rates suggested that neither the phenol nor foulant surface coverages are governed by Langmuirian competitive adsorption. Rather, a reactivity model incorporating kinetic predictions of adsorbed layer compositions (favoring NOM adsorption) outperformed Langmuirian models in providing accurate, unbiased predictions of phenol degradation rates. This research emphasizes the importance of using first-principles models that account for adsorption kinetics when assumptions of equilibrium adsorption do not apply.more » « less
-
Molecularly imprinted polymers (MIPs) are where the complexity of receptor proteins meets the tunability of synthetic research. Receptor proteins, such as enzymes or antibodies, have functional cavities that act as docking platforms by recognizing and binding to complementary ligands. Once bound, a receptor–ligand complex may generate any multitude of cellular responses, including the regulation, uptake, and/or release of certain hormones, neurotransmitters, inorganic minerals, antigens, enzymes, and other molecules within an organism. Just like receptor proteins, MIPs are polymers with carefully selected functional groups that are spacially arranged to recognize target molecules. MIPs are generated by templating a functionalized polymer with a molecule, leaving a cavity that is complementary to the molecule upon removal. That cavity then has an affinity for the molecule that was templeted for later rebinding. The aim of MIP research is to recognize a desired target molecule with the precision of receptor proteins, and to maintain specificity and sensitivity towards the target molecule while tailoring functional properties for advanced applications. Resarchers are far from perfecting the delicate intricacy of mimicking such elegant biological processes, and improvements in all areas of MIP synthesis remain a vibrant and active topic. Various methods explored to synthesize MIPs with impressive recognition capabilities towards target molecules and the recent applications of MIPs are found herein. This review aims to dissect the synthetic steps required to generate MIPs, with emphasis on the more recent routes utilized and overall application advances.more » « less
An official website of the United States government
