Title: Oxygen uptake in complexes related to [NiFeS]- and [NiFeSe]-hydrogenase active sites
A biomimetic study for S/Se oxygenation in Ni(μ-EPh)(μ-SN 2 )Fe, (E = S or Se; SN 2 = Me-diazacycloheptane-CH 2 CH 2 S); Fe = (η 5 -C 5 H 5 )Fe II (CO) complexes related to the oxygen-damaged active sites of [NiFeS]/[NiFeSe]-H 2 ases is described. Mono- and di-oxygenates (major and minor species, respectively) of the chalcogens result from exposure of the heterobimetallics to O 2 ; one was isolated and structurally characterized to have Ni–O–Se Ph –Fe–S connectivity within a 5-membered ring. A compositionally analogous mono-oxy species was implicated by ν (CO) IR spectroscopy to be the corresponding Ni–O–S Ph –Fe–S complex; treatment with O-abstraction agents such as P( o -tolyl) 3 or PMe 3 remediated the O damage. Computational studies (DFT) found that the lowest energy isomers of mono-oxygen derivatives of Ni(μ-EPh)(μ-SN 2 )Fe complexes were those with O attachment to Ni rather than Fe, a result consonant with experimental findings, but at odds with oxygenates found in oxygen-damaged [NiFeS]/[NiFeSe]-H 2 ase structures. A computer-generated model based on substituting − SMe for the N-CH 2 CH 2 S − sulfur donor of the N 2 S suggested that constraint within the chelate hindered O-atom uptake at that sulfur site. more »« less
Aguirre Quintana, Luis M.; Yang, Yan; Ramanathan, Arun; Jiang, Ningxin; Bacsa, John; Maron, Laurent; La Pierre, Henry S.
(, Chemical Communications)
null
(Ed.)
Reaction of the complexes [Fe 2 (μ 2 -NP(pip) 3 ) 2 (NP(pip) 3 ) 2 ] ( 1-Fe ) and [Co 2 (μ 2 -NP(pip) 3 ) 2 (NP(pip) 3 ) 2 ] ( 1-Co ), where [NP(pip) 3 ] 1− is tris(piperidinyl)imidophosphorane, with nitrous oxide, S 8 , or Se 0 results in divergent reactivity. With nitrous oxide, 1-Fe forms [Fe 2 (μ 2 -O)(μ 2 -NP(pip) 3 ) 2 (NP(pip) 3 ) 2 ] ( 2-Fe ), with a very short Fe 3+ –Fe 3+ distance. Reactions of 1-Fe with S 8 or Se 0 result in the bridging, side-on coordination (μ-κ 1 :κ 1 -E 2 2− ) of the heavy chalcogens in complexes [Fe 2 (μ-κ 1 :κ 1 -E 2 )(μ 2 -NP(pip) 3 ) 2 (NP(pip) 3 ) 2 ] (E = S, 3-Fe , or Se, 4-Fe ). In all cases, the complex 1-Co is inert.
Le, Trung; Nguyen, Hao; Perez, Lisa M.; Darensbourg, Donald J.; Darensbourg, Marcetta Y.
(, Angewandte Chemie International Edition)
Abstract With the goal of generating anionic analogues to MN2S2⋅Mn(CO)3Br we introduced metallodithiolate ligands, MN2S22−prepared from the Cys‐X‐Cys biomimetic, ema4−ligand (ema=N,N′‐ethylenebis(mercaptoacetamide); M=NiII, [VIV≡O]2+and FeIII) to Mn(CO)5Br. An unexpected, remarkably stable dimanganese product, (H2N2(CH2C=O(μ‐S))2)[Mn(CO)3]2resulted from loss of M originally residing in the N2S24−pocket, replaced by protonation at the amido nitrogens, generating H2ema2−. Accordingly, the ema ligand has switched its coordination mode from an N2S24−cavity holding a single metal, to a binucleating H2ema2−with bridging sulfurs and carboxamide oxygens within Mn‐μ‐S‐CH2‐C‐O, 5‐membered rings. In situ metal‐templating by zinc ions gives quantitative yields of the Mn2product. By computational studies we compared the conformations of “linear” ema4−to ema4−frozen in the “tight‐loop” around single metals, and to the “looser” fold possible for H2ema2−that is the optimal arrangement for binucleation. XRD molecular structures show extensive H‐bonding at the amido‐nitrogen protons in the solid state.
Elsberg, Josiah G.; Peterson, Austin; Fuller, Amy L.; Berreau, Lisa M.
(, Dalton Transactions)
Interest in O 2 -dependent aliphatic carbon–carbon (C–C) bond cleavage reactions of first row divalent metal diketonate complexes stems from the desire to further understand the reaction pathways of enzymes such as DKE1 and to extract information to develop applications in organic synthesis. A recent report of O 2 -dependent aliphatic C–C bond cleavage at ambient temperature in Ni( ii ) diketonate complexes supported by a tridentate nitrogen donor ligand [(MBBP)Ni(PhC(O)CHC(O)Ph)]Cl ( 7-Cl ; MBBP = 2,6-bis(1-methylbenzimidazol-2-yl)pyridine) in the presence of NEt 3 spurred our interest in further examining the chemistry of such complexes. A series of new TERPY-ligated Ni( ii ) diketonate complexes of the general formula [(TERPY)Ni(R 2 -1,3-diketonate)]ClO 4 ( 1 : R = CH 3 ; 2 : R = C(CH 3 ) 3 ; 3 : R = Ph) was prepared under air and characterized using single crystal X-ray crystallography, elemental analysis, 1 H NMR, ESI-MS, FTIR, and UV-vis. Analysis of the reaction mixtures in which these complexes were generated using 1 H NMR and ESI-MS revealed the presence of both the desired diketonate complex and the bis-TERPY derivative [(TERPY) 2 Ni](ClO 4 ) 2 ( 4 ). Through selective crystallization 1–3 were isolated in analytically pure form. Analysis of reaction mixtures leading to the formation of the MBBP analogs [(MBBP)Ni(R 2 -1,3-diketonate)]X (X = ClO 4 : 5 : R = CH 3 ; 6 : R = C(CH 3 ) 3 ; 7-ClO4 : R = Ph; X = Cl: 7-Cl : R = Ph) using 1 H NMR and ESI-MS revealed the presence of [(MBBP) 2 Ni](ClO 4 ) 2 ( 8 ). Analysis of aerobic acetonitrile solutions of analytically pure 1–3 , 5 and 6 containing NEt 3 and in some cases H 2 O using 1 H NMR and UV-vis revealed evidence for the formation of additional bis-ligand complexes ( 4 and 8 ) but suggested no oxidative diketonate cleavage reactivity. Analysis of the organic products generated from 3 , 7-ClO4 and 7-Cl revealed unaltered dibenzoylmethane. Our results therefore indicate that N 3 -ligated Ni( ii ) complexes of unsubstituted diketonate ligands do not exhibit O 2 -dependent aliphatic C–C bond clevage at room temperature, including in the presence of NEt 3 and/or H 2 O.
Frey, Steven T.; Ballot, Jasper G.; Hands, Allison; Cirka, Haley A.; Rinaolo, Katheryn C.; Phalkun, Nich N.; Kaur, Manpreet; Jasinski, Jerry P.
(, Acta Crystallographica Section E Crystallographic Communications)
Structural analyses of the compounds di-μ-acetato-κ 4 O : O ′-bis{[2-methoxy- N , N -bis(quinolin-2-ylmethyl)ethanamine-κ 4 N , N ′, N ′′, O ]manganese(II)} bis(tetraphenylborate) dichloromethane 1.45-solvate, [Mn 2 (C 23 O 2 ) 2 (C 23 H 23 N 3 O) 2 ](C 24 H 20 B)·1.45CH 2 Cl 2 or [Mn(DQMEA)(μ-OAc) 2 Mn(DQMEA)](BPh 4 ) 2 ·1.45CH 2 Cl 2 or [1] (BPh 4 ) 2 ·1.45CH 2 Cl 2 , and (acetato-κ O )[2-hydroxy- N , N -bis(quinolin-2-ylmethyl)ethanamine-κ 4 N , N ′, N ′′, O ](methanol-κ O )manganese(II) tetraphenylborate methanol monosolvate, [Mn(CH 3 COO)(C 22 H 21 N 3 O)(CH 3 OH)](C 24 H 20 B)·CH 3 OH or [Mn(DQEA)(OAc)(CH 3 OH)]BPh 4 ·CH 3 OH or [2] BPh 4 ·CH 3 OH, by single-crystal X-ray diffraction reveal distinct differences in the geometry of coordination of the tripodal DQEA and DQMEA ligands to Mn II ions. In the asymmetric unit, compound [1] (BPh 4 ) 2 ·(CH 2 Cl 2 ) 1.45 crystallizes as a dimer in which each manganese(II) center is coordinated by the central amine nitrogen, the nitrogen atom of each quinoline group, and the methoxy-oxygen of the tetradentate DQMEA ligand, and two bridging-acetate oxygen atoms. The symmetric Mn II centers have a distorted, octahedral geometry in which the quinoline nitrogen atoms are trans to each other resulting in co-planarity of the quinoline rings. For each Mn II center, a coordinated acetate oxygen participates in C—H...O hydrogen-bonding interactions with the two quinolyl moieties, further stabilizing the trans structure. Within the crystal, weak π – π stacking interactions and intermolecular cation–anion interactions stabilize the crystal packing. In the asymmetric unit, compound [2] BPh 4 ·CH 3 OH crystallizes as a monomer in which the manganese(II) ion is coordinated to the central nitrogen, the nitrogen atom of each quinoline group, and the alcohol oxygen of the tetradentate DQEA ligand, an oxygen atom of OAc, and the oxygen atom of a methanol ligand. The geometry of the Mn II center in [2] BPh 4 ·CH 3 OH is also a distorted octahedron, but the quinoline nitrogen atoms are cis to each other in this structure. Hydrogen bonding between the acetate oxygen atoms and hydroxyl (O—H...O) and quinolyl (C—H...O and N—H...O) moieties of the DQEA ligand stabilize the complex in this cis configuration. Within the crystal, dimerization of complexes occurs by the formation of a pair of intermolecular O3—H3...O2 hydrogen bonds between the coordinated hydroxyl oxygen of the DQEA ligand of one complex and an acetate oxygen of another. Additional hydrogen-bonding and intermolecular cation–anion interactions contribute to the crystal packing.
Wheaton, Amelia M.; Guzei, Ilia A.; Berry, John F.
(, Acta Crystallographica Section E Crystallographic Communications)
null
(Ed.)
Copper(I) iodide complexes are well known for displaying a diverse array of structural features even when only small changes in ligand design are made. This structural diversity is well displayed by five copper(I) iodide compounds reported here with closely related piperidine-2,6-dithione (SNS), isoindoline-1,3-dithione (SNS6), and 6-thioxopiperidin-2-one (SNO) ligands: di-μ-iodido-bis[(acetonitrile-κ N )(6-sulfanylidenepiperidin-2-one-κ S )copper(I)], [Cu 2 I 2 (CH 3 CN) 2 (C 5 H 7 NOS) 2 ] ( I ), bis(acetonitrile-κ N )tetra-μ 3 -iodido-bis(6-sulfanylidenepiperidin-2-one-κ S )- tetrahedro -tetracopper(I), [Cu 4 I 4 (CH 3 CN) 4 (C 5 H 7 NOS) 4 ] ( II ), catena -poly[[(μ-6-sulfanylidenepiperidin-2-one-κ 2 O : S )copper(I)]-μ 3 -iodido], [CuI(C 5 H 7 NOS)] n ( III ), poly[[(piperidine-2,6-dithione-κ S )copper(I)]-μ 3 -iodido], [CuI(C 5 H 7 NS 2 )] n ( IV ), and poly[[(μ-isoindoline-1,3-dithione-κ 2 S : S )copper(I)]-μ 3 -iodido], [CuI(C 8 H 5 NS 2 )] n ( V ). Compounds I and II crystallize as discrete dimeric and tetrameric complexes, whereas III , IV , and V crystallize as polymeric two-dimensional sheets. To the best of our knowledge, compound III is the first instance of an extended hexagonal [Cu 3 I 3 ] structure that is not supported by bridging ligands. Structures I , II , and IV display weak to moderately strong Cu...Cu cuprophilic interactions [Cu...Cu internuclear distances range between 2.5803 (10) and 2.8485 (14) Å]. All structures except III display weak hydrogen-bonding interactions between the N—H of the ligand and the μ 2 and μ 3 -I − atoms. Structure III contains classical N–H...O interactions between the SNO ligands that connect the molecules in a three-dimensional framework. Complex V features π–π stacking interactions between the aryl rings of the SNS6 ligands within the same polymeric sheet. In structure IV , there were three partially occupied solvent molecules of dichloromethane and one partially occupied molecule of acetonitrile present in the asymmetric unit. The SQUEEZE routine [Spek (2015). Acta Cryst . C 71 , 9–18] was used to correct the diffraction data for diffuse scattering effects and to identify the solvent molecules. The given chemical formula and other crystal data do not take into account the solvent molecules.
Yang, Xuemei, Elrod, Lindy C., Reibenspies, Joseph H., Hall, Michael B., and Darensbourg, Marcetta Y. Oxygen uptake in complexes related to [NiFeS]- and [NiFeSe]-hydrogenase active sites. Retrieved from https://par.nsf.gov/biblio/10106212. Chemical Science 10.5 Web. doi:10.1039/C8SC04436H.
Yang, Xuemei, Elrod, Lindy C., Reibenspies, Joseph H., Hall, Michael B., & Darensbourg, Marcetta Y. Oxygen uptake in complexes related to [NiFeS]- and [NiFeSe]-hydrogenase active sites. Chemical Science, 10 (5). Retrieved from https://par.nsf.gov/biblio/10106212. https://doi.org/10.1039/C8SC04436H
Yang, Xuemei, Elrod, Lindy C., Reibenspies, Joseph H., Hall, Michael B., and Darensbourg, Marcetta Y.
"Oxygen uptake in complexes related to [NiFeS]- and [NiFeSe]-hydrogenase active sites". Chemical Science 10 (5). Country unknown/Code not available. https://doi.org/10.1039/C8SC04436H.https://par.nsf.gov/biblio/10106212.
@article{osti_10106212,
place = {Country unknown/Code not available},
title = {Oxygen uptake in complexes related to [NiFeS]- and [NiFeSe]-hydrogenase active sites},
url = {https://par.nsf.gov/biblio/10106212},
DOI = {10.1039/C8SC04436H},
abstractNote = {A biomimetic study for S/Se oxygenation in Ni(μ-EPh)(μ-SN 2 )Fe, (E = S or Se; SN 2 = Me-diazacycloheptane-CH 2 CH 2 S); Fe = (η 5 -C 5 H 5 )Fe II (CO) complexes related to the oxygen-damaged active sites of [NiFeS]/[NiFeSe]-H 2 ases is described. Mono- and di-oxygenates (major and minor species, respectively) of the chalcogens result from exposure of the heterobimetallics to O 2 ; one was isolated and structurally characterized to have Ni–O–Se Ph –Fe–S connectivity within a 5-membered ring. A compositionally analogous mono-oxy species was implicated by ν (CO) IR spectroscopy to be the corresponding Ni–O–S Ph –Fe–S complex; treatment with O-abstraction agents such as P( o -tolyl) 3 or PMe 3 remediated the O damage. Computational studies (DFT) found that the lowest energy isomers of mono-oxygen derivatives of Ni(μ-EPh)(μ-SN 2 )Fe complexes were those with O attachment to Ni rather than Fe, a result consonant with experimental findings, but at odds with oxygenates found in oxygen-damaged [NiFeS]/[NiFeSe]-H 2 ase structures. A computer-generated model based on substituting − SMe for the N-CH 2 CH 2 S − sulfur donor of the N 2 S suggested that constraint within the chelate hindered O-atom uptake at that sulfur site.},
journal = {Chemical Science},
volume = {10},
number = {5},
author = {Yang, Xuemei and Elrod, Lindy C. and Reibenspies, Joseph H. and Hall, Michael B. and Darensbourg, Marcetta Y.},
}
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