skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

Explore Research Products in the PAR
It may take a few hours for recently added research products to appear in PAR search results.


  • NSF Public Access
  • Search Results
  • A taxonomic revision of Cheilodactylidae and Latridae (Centrarchiformes: Cirrhitoidei) using morphological and genomic characters
Title: A taxonomic revision of Cheilodactylidae and Latridae (Centrarchiformes: Cirrhitoidei) using morphological and genomic characters
Systematic relationships within the Cirrhitoidei, a suborder of five closely related families, have been uncertain for over a century. This is particularly true in reference to the families Cheilodactylidae and Latridae, which have been revised numerous times over the past several decades. Species that have been included in these two families are found in temperate regions around the world, which has led to regionally-focused studies that have only exacerbated taxonomic confusion. Here we examine systematic relationships within the Cheilodactylidae and the Latridae using ultraconserved genomic elements with near complete taxonomic sampling, and place our results in the context of the Cirrhitoidei. Our results agree with previous findings suggesting that Cheilodactylidae is restricted to two South African species, with the type species of the family, Cheilodactylus fasciatus Lacépède, forming a clade with C. pixi Smith that together is more closely related to the Chironemidae than to other species historically associated with the genus. We also strongly resolve the relationships of species within the Latridae. As a result of our analyses we revise the taxonomy of Latridae, name a new genus, and re-elevate Chirodactylus and Morwong.  more » « less
Award ID(s):
1701323
PAR ID:
10111784
Author(s) / Creator(s):
; ;
Date Published:
Journal Name:
Zootaxa
Volume:
4585
Issue:
1
ISSN:
1175-5326
Page Range / eLocation ID:
121; 141
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. ; ; ; ; (, Invertebrate Systematics)
    null (Ed.)
    The Opiliones superfamily Triaenonychoidea currently includes two families, the monogeneric New Zealand–endemic Synthetonychiidae Forster, 1954 and Triaenonychidae Sørensen, 1886, a diverse family distributed mostly throughout the temperate Gondwanan terranes, with ~110 genera and ~500 species and subspecies currently described. Traditionally, Triaenonychidae has been divided into subfamilies diagnosed by very few morphological characters largely derived from the troublesome ‘Roewerian system’ of morphology, and classifications based on this system led to many complications. Recent research within Triaenonychoidea using morphology and traditional multilocus data has shown multiple deeply divergent lineages, non-monophyly of Triaenonychidae, and non-monophyly of subfamilies, necessitating a revision based on phylogenomic data. We used sequence capture of ultraconserved elements across 164 samples to create a 50% taxon occupancy matrix with 704 loci. Using phylogenomic and morphological examinations, we explored family-level relationships within Triaenonychoidea, including describing two new families: (1) Lomanellidae Mendes & Derkarabetian, fam. nov., consisting of Lomanella Pocock, 1903, and a newly described genus Abaddon Derkarabetian & Baker, gen. nov. with one species, A. despoliator Derkarabetian, sp. nov.; and (2) the elevation to family of Buemarinoidae Karaman, 2019, consisting of Buemarinoa Roewer, 1956, Fumontana Shear, 1977, Flavonuncia Lawrence, 1959, and a newly described genus Turonychus Derkarabetian, Prieto & Giribet, gen. nov., with one species, T. fadriquei Derkarabetian, Prieto & Giribet, sp. nov. With our dataset we also explored phylogenomic relationships within Triaenonychidae with an extensive taxon set including samples representing ~80% of the genus-level diversity. Based on our results we (1) discuss systematics of this family including the historical use of subfamilies, (2) reassess morphology in the context of our phylogeny, (3) hypothesise placement for all unsampled genera, (4) highlight lineages most in need of taxonomic revision, and (5) provide an updated species-level checklist. Aside from describing new taxa, our study provides the phylogenomic context necessary for future evolutionary and systematic research across this diverse lineage.ZooBank Registration: urn:lsid:zoobank.org:pub:81683834-98AB-43AA-B25A-C28C6A404F41 
    more » « less
  2. ; ; (, ZooKeys)
    Molecular systematic studies of the anthozoan class Octocorallia have revealed widespread incongruence between phylogenetic relationships and taxonomic classification at all levels of the Linnean hierarchy. Among the soft coral taxa in order Malacalcyonacea, the family Alcyoniidae and its type genusAlcyoniumhave both been recognised to be highly polyphyletic. A recent family-level revision of Octocorallia established a number of new families for genera formerly considered to belong to Alcyoniidae, but revision ofAlcyoniumis not yet complete. Previous molecular studies have supported the placement ofAlcyonium verseveldti(Benayahu, 1982) in family Cladiellidae rather than Alcyoniidae, phylogenetically distinct from the other three genera in that family. Here we describe a new genus,Ofwegenumgen. nov.to accommodateO. verseveldticomb. nov.and three new species of that genus,O. coronalucissp. nov.,O. kloogisp. nov., andO. collisp. nov., bringing the total number of species in this genus to four.Ofwegenumgen. nov.is a rarely encountered genus so far known from only a few locations spanning the Indian and western Pacific Oceans. We present the morphological characters of each species and use molecular data from both DNA barcoding and target-enrichment of conserved elements to explore species boundaries and phylogenetic relationships within the genus. 
    more » « less
  3. ; ; ; ; (, Toxins)
    Scorpion toxins are thought to have originated from ancestral housekeeping genes that underwent diversification and neofunctionalization, as a result of positive selection. Our understanding of the evolutionary origin of these peptides is hindered by the patchiness of existing taxonomic sampling. While recent studies have shown phylogenetic inertia in some scorpion toxins at higher systematic levels, evolutionary dynamics of toxins among closely related taxa remain unexplored. In this study, we used new and previously published transcriptomic resources to assess evolutionary relationships of closely related scorpions from the family Hadruridae and their toxins. In addition, we surveyed the incidence of scorpine-like peptides (SLP, a type of potassium channel toxin), which were previously known from 21 scorpion species. We demonstrate that scorpine-like peptides exhibit gene duplications. Our molecular analyses demonstrate that only eight sites of two SLP copies found in scorpions are evolving under positive selection, with more sites evolving under negative selection, in contrast to previous findings. These results show evolutionary conservation in toxin diversity at shallow taxonomic scale. 
    more » « less
  4. ; ; ; ; (, Toxins)
    Scorpion toxins are thought to have originated from ancestral housekeeping genes that underwent diversification and neofunctionalization, as a result of positive selection. Our understanding of the evolutionary origin of these peptides is hindered by the patchiness of existing taxonomic sampling. While recent studies have shown phylogenetic inertia in some scorpion toxins at higher systematic levels, evolutionary dynamics of toxins among closely related taxa remain unexplored. In this study, we used new and previously published transcriptomic resources to assess evolutionary relationships of closely related scorpions from the family Hadruridae and their toxins. In addition, we surveyed the incidence of scorpine-like peptides (SLP, a type of potassium channel toxin), which were previously known from 21 scorpion species. We demonstrate that scorpine-like peptides exhibit gene duplications. Our molecular analyses demonstrate that only eight sites of two SLP copies found in scorpions are evolving under positive selection, with more sites evolving under negative selection, in contrast to previous findings. These results show evolutionary conservation in toxin diversity at shallow taxonomic scale. 
    more » « less
  5. ; (, Frontiers in Arachnid Science)
    Systematics provides the foundational knowledge about the units of biodiversity, i.e., species, and how we classify them. The results of this discipline extend across Biology and can have important impacts on conservation. Here we review the systematic and taxonomic practices within Theraphosidae over the last 260 years. We examine the rate of newly described species and investigate the contemporary practices being used in the description of new genera and species. There have been two large waves of theraphosid taxonomy, with an explosive growth of newly described species and author combinations in the last 60 years. We look back and find that during 2010–2024 contemporary practices in theraphosid systematics and taxonomy have remained largely static, being dominated by morphology-based approaches. Over this period, only 10% of newly described species incorporated DNA data or explicitly stated the species concept used. Similarly for genera, only five of the 37 newly described genera over that time were supported as distinct and monophyletic by DNA. We highlight the taxonomic movement of species among Theraphosidae, Barychelidae, and Paratropididae; however, given the limited molecular sampling for the two latter families, the boundaries of these families remain a significant area of needed research. To promote inclusivity, we provide a copy of this paper in Spanish as supplementary material. 
    more » « less
  • Citation Formats
  • MLA
  • APA
  • Chicago
  • BibTeX
  • Save / Share this Record
  • Send to Email