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1. Maize lodging resistance: Stalk architecture is a stronger predictor of stalk bending strength than chemical composition

   https://doi.org/10.1016/j.biosystemseng.2022.04.010  

   Robertson, Daniel J.; Brenton, Zachary W.; Kresovich, Stephen; Cook, Douglas D. (July 2022, Biosystems Engineering)
2. Biomechanical phenotyping pipeline for stalk lodging resistance in maize

   https://doi.org/10.1016/j.mex.2024.102562  

   Tabaracci, Kaitlin; Bokros, Norbert T; Oduntan, Yusuf; Kunduru, Bharath; DeKold, Joseph; Mengistie, Endalkachew; McDonald, Armando; Stubbs, Christopher J; Sekhon, Rajandeep S; DeBolt, Seth; et al (June 2024, MethodsX)

   Stalk lodging (structural failure crops prior to harvest) significantly reduces annual yields of vital grain crops. The lack of standardized, high throughput phenotyping methods capable of quantifying biomechanical plant traits prevents comprehensive understanding of the genetic architecture of stalk lodging resistance. A phenotyping pipeline developed to enable higher throughput biomechanical measurements of plant traits related to stalk lodging is presented. The methods were developed using principles from the fields of engineering mechanics and metrology and they enable retention of plant-specific data instead of averaging data across plots as is typical in most phenotyping studies. This pipeline was specifically designed to be implemented in large experimental studies and has been used to phenotype over 40,000 maize stalks. The pipeline includes both lab- and field-based phenotyping methodologies and enables the collection of metadata. Best practices learned by implementing this pipeline over the past three years are presented. The specific instruments (including model numbers and manufacturers) that work well for these methods are presented, however comparable instruments may be used in conjunction with these methods as seen fit. • Efficient methods to measure biomechanical traits and record metadata related to stalk lodging. • Can be used in studies with large sample sizes (i.e., > 1,000). 

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3. Genomic variation within the maize stiff-stalk heterotic germplasm pool

   https://doi.org/doi.org/10.1002/tpg2.20114  

   Bornowski, N.; Hamilton, J.P.; Ou, S.; Seetharam, A.S.; Jenkins, J.; Grimwood, J.; Plott, C.; Shu, S.; Talag, J.; Kennedy, M.; et al (July 2021, The plant genome)

   null (Ed.)

   The stiff-stalk heterotic group in Maize (Zea mays L.) is an important source of inbreds used in U.S. commercial hybrid production. Founder inbreds B14, B37, B73, and, to a lesser extent, B84, are found in the pedigrees of a majority of commercial seed parent inbred lines. We created high-quality genome assemblies of B84 and four expired Plant Variety Protection (ex-PVP) lines LH145 representing B14, NKH8431 of mixed descent, PHB47 representing B37, and PHJ40, which is a Pioneer Hi-Bred International (PHI) early stiff-stalk type. Sequence was generated using long-read sequencing achieving highly contiguous assemblies of 2.13–2.18 Gbp with N50 scaffold lengths >200 Mbp. Inbred-specific gene annotations were generated using a core five-tissue gene expression atlas, whereas transposable element (TE) annotation was conducted using de novo and homology-directed methodologies. Compared with the reference inbred B73, synteny analyses revealed extensive collinearity across the five stiff-stalk genomes, although unique components of the maize pangenome were detected. Comparison of this set of stiff-stalk inbreds with the original Iowa Stiff Stalk Synthetic breeding population revealed that these inbreds represent only a proportion of variation in the original stiff-stalk pool and there are highly conserved haplotypes in released public and ex-Plant Variety Protection inbreds. Despite the reduction in variation from the original stiff-stalk population, substantial genetic and genomic variation was identified supporting the potential for continued breeding success in this pool. The assemblies described here represent stiff-stalk inbreds that have historical and commercial relevance and provide further insight into the emerging maize pangenome. 

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4. Maize stalk stiffness and strength are primarily determined by morphological factors

   https://doi.org/10.1038/s41598-021-04114-w  

   Stubbs, Christopher J; Larson, R; Cook, Douglas D (January 2022, Scientific reports)

   The maize (Zea mays) stem is a biological structure that must balance both biotic and structural load bearing duties. These competing requirements are particularly relevant in the design of new bioenergy crops. Although increased stem digestibility is typically associated with a lower structural strength and higher propensity for lodging, with the right balance between structural and biological activities it may be possible to design crops that are high-yielding and have digestible biomass. This study investigates the hypothesis that geometric factors are much more influential in determining structural strength than tissue properties. To study these influences, both physical and in silico experiments were used. First, maize stems were tested in three-point bending. Specimen-specific finite element models were created based on x-ray computed tomography scans. Models were validated by comparison with experimental data. Sensitivity analyses were used to assess the influence of structural parameters such as geometric and material properties. As hypothesized, geometry was found to have a much stronger influence on structural stability than material properties. This information reinforces the notion that deficiencies in tissue strength could be offset by manipulation of stalk morphology, thus allowing the creation of stalks which are both resilient and digestible. 

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5. Experimental error analysis of biomechanical phenotyping for stalk lodging resistance in maize

   https://doi.org/10.1038/s41598-023-38767-6  

   DeKold, Joseph; Robertson, Daniel (December 2023, Scientific Reports)

   Abstract Stalk lodging destroys between 5 and 25% of grain crops annually. Developing crop varieties with improved lodging resistance will reduce the yield gap. Field-phenotyping equipment is critical to develop lodging resistant crop varieties, but current equipment is hindered by measurement error. Relatively little research has been done to identify and rectify sources of measurement error in biomechanical phenotyping platforms. This study specifically investigated sources of error in bending stiffness and bending strength measurements of maize stalks acquired using an in-field phenotyping platform known as the DARLING. Three specific sources of error in bending stiffness and bending strength measurements were evaluated: horizontal device placement, vertical device placement and incorrect recordings of load cell height. Incorrect load cell heights introduced errors as large as 130% in bending stiffness and 50% in bending strength. Results indicated that errors on the order of 15–25% in bending stiffness and 1–10% in bending strength are common in field-based measurements. Improving the design of phenotyping devices and associated operating procedures can mitigate this error. Reducing measurement error in field-phenotyping equipment is crucial for advancing the development of improved, lodging-resistant crop varieties. Findings have important implications for reducing the yield gap. 

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