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1. Arthropod diversity in shallow subterranean habitats of the Appalachian Mountains

   https://doi.org/10.3897/subtbiol.49.128521  

   Harrison, G T; Dunleavy, Howard P; Vasquez-Valverde, Luisa F; Del_Pozo-Valdivia, Alejandro I; Ivanov, Kaloyan; Marek, Paul E (August 2024, Subterranean Biology)

   Subterranean arthropods are important components of soils and contribute essential food-web functions and other ecosystem services, however, their diversity and community composition has scarcely been assessed. Subterranean pitfall traps are a commonly used method for sampling soil habitats in Europe but have never been widely implemented in the Americas. We used subterranean pitfall traps to sample previously unsurveyed arthropod communities in southwestern Virginia, U.S. Traps were placed in shallow subterranean habitats (SSHs), underground habitats close to the surface where light does not penetrate, and more specifically at the interface between the soil and underlying “milieu souterrain superficiel”—a microhabitat consisting of the air-filled interstitial spaces between rocks (abbreviated MSS). In total, 2,260 arthropod specimens were collected constituting 345 morphospecies from 8 classes, 33 orders, and 94 families. A region of the mitochondrial cytochromecoxidase subunit I (COI) gene was amplified and sequenced, and objective sequence clustering of 3% was used to establish molecular operational taxonomic units (mOTUs) to infer observed species richness. In all, 272 COI barcodes representing 256 mOTUs were documented for rare soil-dwelling arthropod taxa and are published to build a molecular library for future research in this system. This work is the first taxonomically extensive survey of North American soil-dwelling arthropods greater than 10 cm below the soil surface. 

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2. Phototaxis in a wild isolate of the cyanobacterium Synechococcus elongatus

   https://doi.org/10.1073/pnas.1812871115  

   Yang, Yiling; Lam, Vinson; Adomako, Marie; Simkovsky, Ryan; Jakob, Annik; Rockwell, Nathan C.; Cohen, Susan E.; Taton, Arnaud; Wang, Jingtong; Lagarias, J. Clark; et al (December 2018, Proceedings of the National Academy of Sciences)

   Many cyanobacteria, which use light as an energy source via photosynthesis, have evolved the ability to guide their movement toward or away from a light source. This process, termed “phototaxis,” enables organisms to localize in optimal light environments for improved growth and fitness. Mechanisms of phototaxis have been studied in the coccoid cyanobacteriumSynechocystissp. strain PCC 6803, but the rod-shapedSynechococcus elongatusPCC 7942, studied for circadian rhythms and metabolic engineering, has no phototactic motility. In this study we report a recent environmental isolate ofS. elongatus, the strain UTEX 3055, whose genome is 98.5% identical to that of PCC 7942 but which is motile and phototactic. A six-gene operon encoding chemotaxis-like proteins was confirmed to be involved in phototaxis. Environmental light signals are perceived by a cyanobacteriochrome, PixJ_Se(Synpcc7942_0858), which carries five GAF domains that are responsive to blue/green light and resemble those of PixJ fromSynechocystis. Plate-based phototaxis assays indicate that UTEX 3055 uses PixJ_Seto sense blue and green light. Mutation of conserved functional cysteine residues in different GAF domains indicates that PixJ_Secontrols both positive and negative phototaxis, in contrast to the multiple proteins that are employed for implementing bidirectional phototaxis inSynechocystis. 

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3. Zooming in on mechanistic predator–prey ecology: Integrating camera traps with experimental methods to reveal the drivers of ecological interactions

   https://doi.org/10.1111/1365-2656.13264  

   Smith, J. A. (May 2020, The journal of animal ecology)

   1. Camera trap technology has galvanized the study of predator-prey ecology in wild animal communities by expanding the scale and diversity of predator-prey interactions that can be analyzed. While observational data from systematic camera arrays have informed inferences on the spatiotemporal outcomes of predator-prey interactions, the capacity for observational studies to identify mechanistic drivers of species interactions is limited. 2. Experimental study designs that utilize camera traps uniquely allow for testing hypothesized mechanisms that drive predator and prey behavior, incorporating environmental realism not possible in the lab while benefiting from the distinct capacity of camera traps to generate large data sets from multiple species with minimal observer interference. However, such pairings of camera traps with experimental methods remain underutilized. 3. We review recent advances in the experimental application of camera traps to investigate fundamental mechanisms underlying predator-prey ecology and present a conceptual guide for designing experimental camera trap studies. 4. Only 9% of camera trap studies on predator-prey ecology in our review mention experimental methods, but the application of experimental approaches is increasing. To illustrate the utility of camera trap-based experiments using a case study, we propose a study design that integrates observational and experimental techniques to test a perennial question in predator-prey ecology: how prey balance foraging and safety, as formalized by the risk allocation hypothesis. We discuss applications of camera trap-based experiments to evaluate the diversity of anthropogenic influences on wildlife communities globally. Finally, we review challenges to conducting experimental camera trap studies. 5. Experimental camera trap studies have already begun to play an important role in understanding the predator-prey ecology of free-living animals, and such methods will become increasingly critical to quantifying drivers of community interactions in a rapidly changing world. We recommend increased application of experimental methods in the study of predator and prey responses to humans, synanthropic and invasive species, and other anthropogenic disturbances. 

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4. Particle-in-Cell Simulation of Quasi-Neutral Plasma Trapping by RF Multipole Electric Fields

   https://doi.org/10.3390/physics1030028  

   Hicks, Nathaniel K.; Bowman, Amanda; Godden, Katarina (December 2019, Physics)

   Radio-frequency (RF) charged particle traps, such as the Paul trap or higher order RF multipole traps, may be used to trap quasi-neutral plasma. The presence of positive and negative plasma species mitigates the ejection of particles that occurs due to space charge repulsion. For symmetric species, such as a pair plasma, the trapped particle distribution is essentially equal for both species. For plasma with species of disparate charge-to-mass ratio, the RF parameters are chosen to directly trap the lighter species, leading to loss of the heavier species until sufficient net space charge develops to prevent further loss. Two-dimensional (2D) electrostatic particle-in-cell simulations are performed of cases with mass ratio m+/m− = 10, and also with ion–electron plasma. Multipole cases including order N = 2 (quadrupole) and higher order N = 8 (hexadecapole) are considered. The light ion-heavy ion N = 8 case exhibits particles losses less than 5% over 2500 RF periods, but the N = 8 ion–electron case exhibits a higher loss rate, likely due to non-adiabaticity of electron trajectories at the boundary, but still with low total electron loss current on the order of 10 μA. The N = 2 ion-electron case is adiabatic and stable, but is subject to a smaller trapping volume and greater initial perturbation of the bulk plasma by the trapping field. 

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5. Does ant–plant mutualism have spillover effects on the non‐partner ant community?

   https://doi.org/10.1002/ece3.8524  

   Donald, Marion L.; Miller, Tom E. X. (January 2022, Ecology and Evolution)

   Abstract Mutualism benefits partner species, and theory predicts these partnerships can affect the abundance, diversity, and composition of partner and non‐partner species. We used 16 years of monitoring data to determine the ant partner species of tree cholla cacti (Cylindropuntia imbricata), which reward ants with extrafloral nectar in exchange for anti‐herbivore defense. These long‐term data revealed one dominant ant partner (Liometopum apiculatum) and two less common partners (Crematogaster opuntiaeandForelius pruinosus). We then used short‐term characterization of the terrestrial ant community by pitfall trapping to sample partner and non‐partner ant species across ten plots of varying cactus density. We found that the dominant ant partner tended a higher proportion cacti in plots of higher cactus density, and was also found at higher occurrence within the pitfall traps in higher density plots, suggesting a strong positive feedback that promotes ant partner occurrence where plant partners are available. Despite the strong association and increased partner occurrence, ant community‐wide effects from this mutualism appear limited. Of the common ant species, the occurrence of a single non‐partner ant species was negatively associated with cactus density and with the increased presence ofL. apiculatum. Additionally, the composition and diversity of the ant community in our plots were insensitive to cactus density variation, indicating that positive effects of the mutualism on the dominant ant partner did not have cascading impacts on the ant community. This study provides novel evidence that exclusive mutualisms, even those with a strong positive feedback, may be limited in the scope of their community‐level effects. 

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