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1. Aggregated filter‐feeders govern the flux and stoichiometry of locally available energy and nutrients in rivers

   https://doi.org/10.1111/1365-2435.13778  

   Hopper, Garrett W. ; Chen, Shuo ; Sánchez González, Irene ; Bucholz, Jamie R. ; Lu, YueHan ; Atkinson, Carla L. ; Gonzalez, ed., Angélica ( March 2021 , Functional Ecology)

   Biogeochemical cycling has often been characterized by physical and microbial processes, yet animals can be essential mediators of energy and nutrients in ecosystems. Excretion by aggregated animals can be an important local source of inorganic nutrients in green food webs; however, whether animals are a source of dissolved energy that can support brown food webs is understudied.

   We tested whether animal aggregations are a substantial flux of bioavailable dissolved organic matter (DOM) by studying spatially stable, biogeochemical hotspots formed by filter‐feeding freshwater mussels. We used parallel‐factor analysis to quantify DOM fluorescent components composition of mussel excretion and expected digestive breakdown of particulate food sources would lead to excretion of labile DOM. Next, we combined measured excretion rates of DOM, ammonium (, N) and phosphorous (SRP; P) for 22 species with biomass estimates for 14 aggregations to quantify contributions of DOM, N and P to local availability. Because mussels occupy distinct stoichiometric niches, we anticipated that differences in species biomass and assemblage structure would elicit different flux and stoichiometries of aggregate excretion.

   Aggregate dissolved organic carbon (DOC) excretion was minor (1%–11%) compared to N (12%–2,860%) and P (1%–97%), yet generalities across assemblages emerged regarding organic matter transformation by mussels towards labile protein‐like compounds compared to abundant aromatic, humic compounds in ambient water.

   Aggregate excretion of labile DOM was a substantial pool of bioavailable energy, contributing 2%–114% of local labile DOM. Spatial differences in assemblage structure led to strong differences in aggregate flux and stoichiometry driven by biomass and stoichiometric trait expression of species with contrasting dominance patterns.

   Under the nutrient conditions of our study (high C:nutrient), biogeochemical hotspots associated with low‐trophic position animal biomass may indirectly control energy flow to the brown food web by shifting C:nutrient stoichiometry available to microbes or directly by increasing the flux of microbially available DOM. Collectively, our results highlight a potentially substantial flux of labile energy and nutrients to microbial communities through the transformation of ingested organic matter by aggregations of animals and emphasize that shared functional trait classification may not translate into shared ecological function.

   A freePlain Language Summarycan be found within the Supporting Information of this article.

    

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2. Ecological and Phenotypic Diversification after a Continental Invasion in Neotropical Freshwater Stingrays

   https://doi.org/10.1093/icb/icac019  

   Kolmann, M A ; Marques, F P ; Weaver, J C ; Dean, M N ; Fontenelle, J P ; Lovejoy, N R ( April 2022 , Integrative and Comparative Biology)

   Abstract Habitat transitions are key potential explanations for why some lineages have diversified and others have not—from Anolis lizards to Darwin's finches. The ecological ramifications of marine-to-freshwater transitions for fishes suggest evolutionary contingency: some lineages maintain their ancestral niches in novel habitats (niche conservatism), whereas others alter their ecological role. However, few studies have considered phenotypic, ecological, and lineage diversification concurrently to explore this issue. Here, we investigated the macroevolutionary history of the taxonomically and ecologically diverse Neotropical freshwater river rays (subfamily Potamotrygoninae), which invaded and diversified in the Amazon and other South American rivers during the late Oligocene to early Miocene. We generated a time-calibrated, multi-gene phylogeny for Potamotrygoninae and reconstructed evolutionary patterns of diet specialization. We measured functional morphological traits relevant for feeding and used comparative phylogenetic methods to examine how feeding morphology diversified over time. Potamotrygonine trophic and phenotypic diversity are evenly partitioned (non-overlapping) among internal clades for most of their history, until 20–16 mya, when more recent diversification suggests increasing overlap among phenotypes. Specialized piscivores (Heliotrygon and Paratrygon) evolved early in the history of freshwater stingrays, while later trophic specialization (molluscivory, insectivory, and crustacivory) evolved in the genus Potamotrygon. Potamotrygonins demonstrate ecological niche lability in diets and feeding apparatus; however, diversification has mostly been a gradual process through time. We suggest that competition is unlikely to have limited the potamotrygonine invasion and diversification in South America. 

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3. Animal effects on dissolved organic carbon bioavailability in an algal controlled ecosystem

   https://doi.org/10.1111/fwb.13438  

   Parr, Thomas B. ; Vaughn, Caryn C. ; Gido, Keith B. ( December 2019 , Freshwater Biology)

   Animals exert both direct and indirect controls over elemental cycles, linking primary producer‐based (green) and decomposer‐based (brown) food webs through top‐down trophic interactions and bottom‐up element regeneration. Where animals are aggregated at high biomass, they create hotspots of elemental cycling. The relative importance of animal control on elemental cycling depends on animal biomass, species functional traits (i.e. feeding mode and stoichiometry), and their overlap.

   We evaluated how animal community complexity affects the mechanisms regulating energy flow to the brown food web. We conducted a mesocosm experiment where we varied the biomass and overlap of animals with different life history and stoichiometric traits (stream fish and mussels) and measured how this influenced the quantity and fraction of labile carbon available to microbes. We used linear models and structural equation modelling to evaluate direct (excretion) and indirect (herbivory, nutrient availability, and nutrient stoichiometry) effects of animals on bioavailable dissolved organic carbon (BDOC) concentration.

   In experimental stream mesocosms, we found support for both direct (DOC excretion) and indirect (grazing) animal influences on BDOC concentration. Although we found that snail, fish, and mussel biomass increased nutrient concentrations, neither nutrient concentration nor stoichiometry had a significant effect on BDOC concentration. This has been due to the high background nutrient concentration context of our stream mesocosm water. Snails, probably due to their high biomass and small body size, exerted a significant positive direct control on BDOC concentration. Fish and mussels exerted a significant negative indirect control on BDOC via their effects (grazing and bioturbation) on algal biomass.

   Our results imply that primary consumers with different feeding strategies provide a key mechanism regulating the flow of DOC into the brown food web through direct (excretion) and indirect (grazing) controls on primary producers. This highlights that animals can provide important controls on the production of bioavailable organic energy supporting microbes in aquatic ecosystems, but the importance of these controls depends on the nutrient context and the distribution of primary producer and animal biomasses.

    

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4. Nutrient and stoichiometric time series measurements of decomposing coarse detritus in freshwaters

   https://doi.org/10.1002/ecy.4114  

   Robbins, Caleb J. ; Norman, Beth C. ; Halvorson, Halvor M. ; Manning, David W. P. ; Bastias, Elliot ; Biasi, Cristiane ; Dodd, Allyn K. ; Eckert, Rebecca A. ; Gossiaux, Alice ; Jabiol, Jérémy ; et al ( June 2023 , Ecology)

   Decomposition of coarse detritus (e.g., dead organic matter larger than ~1 mm such as leaf litter or animal carcasses) in freshwater ecosystems is well described in terms of mass loss, particularly as rates that compress mass loss into one number (e.g., a first‐order decay coefficient, or breakdown rate, “k”); less described are temporal changes in the elemental composition of these materials during decomposition, with important implications for elemental cycling from microbes to ecosystems. This stands in contrast with work in the terrestrial realm, where a focus on detrital elemental cycling has provided a sharper mechanistic understanding of decomposition, especially with specific processes such as immobilization and mineralization. Notably, freshwater ecologists often measure carbon (C), nitrogen (N), and phosphorus (P), and their stoichiometric ratios in decomposing coarse materials, including carcasses, wood, leaf litter, and more, but these measurements remain piecemeal. These detrital nutrients are measurements of the entire detrital–microbial complex and are integrative of numerous processes, especially nutrient immobilization and mineralization, and associated microbial growth and death. Thus, data relevant to an elemental, mechanistically focused decomposition ecology are available in freshwaters, but have not been fully applied to that purpose. We synthesized published detrital nutrient and stoichiometry measurements at a global scale, yielding 4038 observations comprising 810 decomposition time series (i.e., measurements within a defined cohort of decomposing material through time) to build a basis for understanding the temporality of elemental content in freshwater detritus. Specifically, the dataset focuses on temporally and ontogenetically (mass loss) explicit measurements of N, P, and stoichiometry (C:N, C:P, N:P). We also collected ancillary data, including detrital characteristics (e.g., species, lignin content), water physiochemistry, geographic location, incubation system type, and methodological variables (e.g., bag mesh size). These measurements are important to unlocking mechanistic insights into detrital ontogeny (the temporal trajectory of decomposing materials) that can provide a deeper understanding of heterotroph‐driven C and nutrient cycling in freshwaters. Moreover, these data can help to bridge aquatic and terrestrial decomposition ecology, across plant or animal origin. By focusing on temporal trajectories of elements, this dataset facilitates cross‐ecosystem comparisons of fundamental decomposition controls on elemental fluxes. It provides a strong starting point (e.g., via modeling efforts) for comparing processes such as immobilization and mineralization that are understudied in freshwaters. Time series from decomposing leaf litter, particularly in streams, are common in the dataset, but we also synthesized ontogenies of animal‐based detritus, which tend to decompose rapidly compared with plant‐based detritus that contains high concentrations of structural compounds such as lignin and cellulose. Although animal‐based data were rare, comprising only three time series, their inclusion in this dataset underscores the opportunities to develop an understanding of decomposition that encompasses all detrital types, from carrion to leaf litter. There are no copyright or proprietary restrictions on the dataset; please cite this data paper when reusing these materials.

    

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5. The gut bacterial microbiome of the Threeridge mussel, Amblema plicata , varies between rivers but shows a consistent core community

   https://doi.org/10.1111/fwb.13905  

   Lawson, Lauren A. ; Atkinson, Carla L. ; Jackson, Colin R. ( March 2022 , Freshwater Biology)

   Freshwater mussels are important for nutrient cycling and ecosystem health as they filter feed on their surrounding water. This filter feeding makes these bivalves especially sensitive to conditions in their environment. Gut microbial communities (microbiomes) have been recognised as important to both host organism and ecosystem health; however, how freshwater mussel microbiomes are organised and influenced is unclear.

   In this study, the gut bacterial microbiome of Threeridge mussel,Amblema plicata, was compared across two river basins, five rivers, and nine local sites in the south‐eastern U.S.A. Mussel gut tissue was dissected, DNA extracted, and the microbiome characterised by high throughput sequencing of the V4 region of the 16S ribosomal RNA gene.

   Planctomycetes, Firmicutes, and Cyanobacteria were the most common bacterial phyla within the guts of all sampledA.plicata. However, the relative abundances of these major bacterial phyla differed between mussels sampled from different rivers and river basins, as did the relative abundance of specific bacterial operational taxonomic units (OTUs). Despite these differences, a core microbiome was identified across all mussels, with eight OTUs being consistent members of theA.plicatamicrobiome at all sites, the most abundant OTU identifying as a member of the family Planctomycetaceae. Geographic distance between sites was not correlated with similarity in the structure of the gut microbiome, which was more related to site physicochemistry.

   Overall, these results suggest that while physicochemical conditions affect the composition of transient bacteria in the Threeridge mussel gut microbiome, the core microbiome is largely unaffected, and a portion of theA.plicatamicrobiome is retained regardless of the river system.

   How long transient bacteria remain in the gut, and to what extent these transient microbes aid in host function is still unknown. Core microbiota have been found to aid in multiple functions within animal hosts, and within freshwater mussels this core microbiome may aid in nutrient processing and cycling. Therefore, it is important to look at both transient and core microbes when studying the structure of freshwater invertebrate microbiomes.

    

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