Ionic liquids (ILs) are gaining attention as protein stabilizers and refolding additives. However, varying degrees of success with this approach motivates the need to better understand fundamental IL-protein interactions. A combination of experiment and simulation is used to investigate the thermal unfolding of lysozyme in the presence of two imidazolium-based ILs (1-ethyl-3-methylimidazolium ethylsulfate, [EMIM][EtSO 4 ] and 1-ethyl-3-methylimidazolium diethylphosphate, [EMIM][Et 2 PO 4 ]). Both ILs reduce lysozyme melting temperature Tm , but more gradually than strong denaturants. [EMIM][Et 2 PO 4 ] lowers lysozyme Tm more readily than [EMIM][EtSO 4 ], as well as requiring less energy to unfold the protein, as determined by the calorimetric enthalpy ΔH. Intrinsic fluorescence measurements indicate that both ILs bind to tryptophan residues in a dynamic mode, and furthermore, molecular dynamics simulations show a high density of [EMIM] + near lysozyme’s Trp62 residue. For both ILs approximately half of the [EMIM] + cations near Trp62 show perfect alignment of their respective rings. The [EMIM] + cations, having a "local" effect in binding to tryptophan,likely perturb a critically important Arg-Trp-Arg bridge through favorable π − π and cation-π interactions. Simulations show that the anions, [EtSO 4 ] - and [Et 2 PO 4 ] - , interact in a "global" manner with lysozyme, due to this protein’s strong net positive charge. The anions also determine the local distribution of ions surrounding the protein. [Et 2 PO 4 ] - is found to have a closer first coordination shell around the protein and stronger Coulomb interactions with lysozyme than [EtSO 4 ] - , which could explain why the former anion is more destabilizing. Patching of ILs to the protein surface is also observed, suggesting there is no universal IL solvent for proteins, and highlighting the complexity of the IL-protein environment.
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Practical guide to designing safer ionic liquids for cellulose dissolution using a tiered computational framework
The theoretical promise of ionic liquids (ILs) as ‘green’ designer solvents that can be tuned to facilitate key steps of lignocellulosic biomass processing has not been fully realized due to the sheer number of possible cation–anion combinations and concerns about toxicity of this class of chemicals. Although computational methods are being applied to identify ILs with specific functions, such as dissolution of cellulose, they are not used to iteratively design new ionic liquids with the goal of simultaneously optimizing multiple criteria, such as performance and environmental safety. Here we describe a tiered computational approach to develop new ILs based on mixed quantum and molecular mechanics simulations, which, combined with analysis of physicochemical properties of ILs can be used to guide structural modifications to design both better performing task-specific and safer IL analogs. The increase in computing requirements of the proposed approach over structure-based statistical models is relatively modest; yet, our approach is more robust than these models, and far less costly than highly-accurate but very demanding large-scale molecular simulations.
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- Award ID(s):
- 1805080
- NSF-PAR ID:
- 10169405
- Date Published:
- Journal Name:
- Green Chemistry
- Volume:
- 22
- Issue:
- 11
- ISSN:
- 1463-9262
- Page Range / eLocation ID:
- 3626 to 3637
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1039/D0GC00923G
