An official website of the United States government
One of the principal goals of graph modeling is to capture the building blocks of network data in order to study various physical and natural phenomena. Recent work at the intersection of formal language theory and graph theory has explored the use of graph grammars for graph modeling. However, existing graph grammar formalisms, like Hyperedge Replacement Grammars, can only operate on small tree-like graphs. The present work relaxes this restriction by revising a different graph grammar formalism called Vertex Replacement Grammars (VRGs). We show that a variant of the VRG called Clustering-based Node Replacement Grammar (CNRG) can be efficiently extracted from many hierarchical clusterings of a graph. We show that CNRGs encode a succinct model of the graph, yet faithfully preserves the structure of the original graph. In experiments on large real-world datasets, we show that graphs generated from the CNRG model exhibit a diverse range of properties that are similar to those found in the original networks.
more »
« less
Same Stats, Different Graphs: Exploring the Space of Graphs in Terms of Graph Properties
Data analysts commonly utilize statistics to summarize large datasets. While it is often sufficient to explore only the summary statistics of a dataset (e.g., min/mean/max), Anscombe's Quartet demonstrates how such statistics can be misleading. We consider a similar problem in the context of graph mining. To study the relationships between different graph properties and summary statistics, we examine low-order non-isomorphic graphs and provide a simple visual analytics system to explore correlations across multiple graph properties. However, for larger graphs, studying the entire space quickly becomes intractable. We use different random graph generation methods to further look into the distribution of graph properties for higher order graphs and investigate the impact of various sampling methodologies. We also describe a method for generating many graphs that are identical over a number of graph properties and statistics yet are clearly different and identifiably distinct.
more »
« less
- Award ID(s):
- 1839274
- PAR ID:
- 10179527
- Date Published:
- Journal Name:
- IEEE Transactions on Visualization and Computer Graphics
- ISSN:
- 1077-2626
- Page Range / eLocation ID:
- 1 to 1
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Abstract Suppose we are given a system of coupled oscillators on an unknown graph along with the trajectory of the system during some period. Can we predict whether the system will eventually synchronize? Even with a known underlying graph structure, this is an important yet analytically intractable question in general. In this work, we take an alternative approach to the synchronization prediction problem by viewing it as a classification problem based on the fact that any given system will eventually synchronize or converge to a non-synchronizing limit cycle. By only using some basic statistics of the underlying graphs such as edge density and diameter, our method can achieve perfect accuracy when there is a significant difference in the topology of the underlying graphs between the synchronizing and the non-synchronizing examples. However, in the problem setting where these graph statistics cannot distinguish the two classes very well (e.g., when the graphs are generated from the same random graph model), we find that pairing a few iterations of the initial dynamics along with the graph statistics as the input to our classification algorithms can lead to significant improvement in accuracy; far exceeding what is known by the classical oscillator theory. More surprisingly, we find that in almost all such settings, dropping out the basic graph statistics and training our algorithms with only initial dynamics achieves nearly the same accuracy. We demonstrate our method on three models of continuous and discrete coupled oscillators—the Kuramoto model, Firefly Cellular Automata, and Greenberg-Hastings model. Finally, we also propose an “ensemble prediction” algorithm that successfully scales our method to large graphs by training on dynamics observed from multiple random subgraphs.more » « less
-
Federated learning has emerged as an important paradigm for training machine learning models in different domains. For graph-level tasks such as graph classification, graphs can also be regarded as a special type of data samples, which can be collected and stored in separate local systems. Similar to other domains, multiple local systems, each holding a small set of graphs, may benefit from collaboratively training a powerful graph mining model, such as the popular graph neural networks (GNNs). To provide more motivation towards such endeavors, we analyze real-world graphs from different domains to confirm that they indeed share certain graph properties that are statistically significant compared with random graphs. However, we also find that different sets of graphs, even from the same domain or same dataset, are non-IID regarding both graph structures and node features. To handle this, we propose a graph clustered federated learning (GCFL) framework that dynamically finds clusters of local systems based on the gradients of GNNs, and theoretically justify that such clusters can reduce the structure and feature heterogeneity among graphs owned by the local systems. Moreover, we observe the gradients of GNNs to be rather fluctuating in GCFL which impedes high-quality clustering, and design a gradient sequence-based clustering mechanism based on dynamic time warping (GCFL+). Extensive experimental results and in-depth analysis demonstrate the effectiveness of our proposed frameworks.more » « less
-
A wide variety of machine learning tasks such as knowledge base completion, ontology alignment, and multi-label classification can benefit from incorporating into learning differentiable representations of graphs or taxonomies. While vectors in Euclidean space can theoretically represent any graph, much recent work shows that alternatives such as complex, hyperbolic, order, or box embeddings have geometric properties better suited to modeling real-world graphs. Experimentally these gains are seen only in lower dimensions, however, with performance benefits diminishing in higher dimensions. In this work, we introduce a novel variant of box embeddings that uses a learned smoothing parameter to achieve better representational capacity than vector models in low dimensions, while also avoiding performance saturation common to other geometric models in high dimensions. Further, we present theoretical results that prove box embeddings can represent any DAG. We perform rigorous empirical evaluations of vector, hyperbolic, and region-based geometric representations on several families of synthetic and real-world directed graphs. Analysis of these results exposes correlations between different families of graphs, graph characteristics, model size, and embedding geometry, providing useful insights into the inductive biases of various differentiable graph representations.more » « less
-
Abstract In this work, we explore multiplex graph (networks with different types of edges) generation with deep generative models. We discuss some of the challenges associated with multiplex graph generation that make it a more difficult problem than traditional graph generation. We propose TenGAN, the first neural network for multiplex graph generation, which greatly reduces the number of parameters required for multiplex graph generation. We also propose 3 different criteria for evaluating the quality of generated graphs: a graph-attribute-based, a classifier-based, and a tensor-based method. We evaluate its performance on 4 datasets and show that it generally performs better than other existing statistical multiplex graph generative models. We also adapt HGEN, an existing deep generative model for heterogeneous information networks, to work for multiplex graphs and show that our method generally performs better.more » « less
- Free Publicly Accessible Full Text
-
Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1109/TVCG.2019.2946558
