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1. Structures of self-assembled n -alkanethiols on gold by reflection high-energy electron diffraction

   https://doi.org/10.1039/d0cp02866e  

   Ghosh, Mithun; Yang, Ding-Shyue (August 2020, Physical Chemistry Chemical Physics)

   null (Ed.)

   The structures of long-chain alkanethiols (C 18 H 37 SH) chemisorbed on an Au(111) single crystal were investigated using reflection high-energy electron diffraction (RHEED). The primary structure observed as a major species in the as-deposited films contains gold adatoms below the sulfur headgroups. Between the small ordered domains with the alkyl chains tilting toward six directions are azimuthally disorderly packed regions, with a similar average tilt of 30.2°. In contrast, a significant reduction in the coverage of gold adatoms is found in the thermally-induced phase. This superlattice is shown to contain a mixture of two sulfur arrangements, both of which exhibit a small S–S distance, and the pairing of the aliphatic chains. A microscopic picture is then given for the structural transition. These findings demonstrate how the RHEED technique may be used to resolve structures of nanometer-thick thin films with multiple orders at the interfaces. 

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2. Deciphering the structural origins of high sulfur solubility in vanadium-containing borosilicate glasses

   https://doi.org/10.1016/j.jnoncrysol.2023.122554  

   Saini, Rajan; Neuville, Daniel R.; Youngman, Randall E.; Goel, Ashutosh (August 2023, Journal of Non-Crystalline Solids)

   The addition of V2O5 has been long known to increase the sulfur (as SO42-) solubility in borosilicate glasses. However, the mechanism governing this effect is still unknown. Although several studies have been published in the past two decades attempting to decipher the structural origins of increasing sulfur solubility as a function of V2O5 in borosilicate glasses, most of these studies remain inconclusive. The work presented in this paper attempts to answer the question, “Why does V2O5 increase sulfur solubility in borosilicate glasses?” Accordingly, a series of melt-quenched glasses in the system [30 Na2O – 5 Al2O3 – 15 B2O3 –50 SiO2](100-x) – xV2O5, where x varies between 0 – 9 mol.%, have been characterized for their short-to-intermediate range structure and the redox chemistry of vanadium using 11B, 27Al, 51V MAS NMR, Raman, and XPS spectroscopy. The impact of V2O5 on sulfur solubility in glasses has been followed by ICP-OES. The addition of ≤ 5 mol.% V2O5 results in a linear increase in sulfur solubility in the investigated glass system. Based on the results, we hypothesize that adding vanadium to the glasses increases their network connectivity, but reduces the network rigidity by replacing stronger Si–O–Si linkages with weaker Si–O–V linkages and forming (VO3)n-single chains. These modifications to the glass structure increase the flexibility of the network, thus making it possible to accommodate SO42− in their voids/open spaces. 

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3. Crystallization and melting of polymer chains on graphene and graphene oxide

   https://doi.org/10.1039/D3NR00817G  

   Ghasemi, Arman; Liao, Yangchao; Li, Zhaofan; Xia, Wenjie; Gao, Wei (July 2023, Nanoscale)

   This study employs all-atomistic (AA) molecular dynamics (MD) simulations to investigate the crystallization and melting behavior of polar and nonpolar polymer chains on monolayers of graphene and graphene oxide (GO). Polyvinyl alcohol (PVA) and polyethylene (PE) are used as representative polar and nonpolar polymers, respectively. A modified order parameter is introduced to quantify the degree of two-dimensional (2D) crystallization of polymer chains. Our results show that PVA and PE chains exhibit significantly different crystallization behavior. PVA chains tend to form a more rounded, denser, and folded-stemmed lamellar structure, while PE chains tend to form an elongated straight pattern. The presence of oxidation groups on the GO substrate reduces the crystallinity of both PVA and PE chains, which is derived from the analysis of modified order parameter. Meanwhile, the crystallization patterns of polymer chains are influenced by the percentage, chemical components, and distribution of the oxidation groups. In addition, our study reveals that 2D crystalized polymer chains exhibit different melting behavior depending on their polarity. PVA chains exhibit a more molecular weight-dependent melting temperature than PE chains, which have a lower melting temperature and are relatively insensitive to molecular weight. These findings highlight the critical role of substrate and chain polarity in the crystallization and melting of polymer chains. Overall, our study provides valuable insights into the design of graphene-based polymer heterostructures and composites with tailored properties. 

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4. Quantitative analysis of weak current rectification in molecular tunnel junctions subject to mechanical deformation reveals two different rectification mechanisms for oligophenylene thiols versus alkane thiols

   https://doi.org/10.1039/d1nr04410a  

   Xie, Zuoti; Bâldea, Ioan; Nguyen, Quyen Van; Frisbie, C. Daniel (October 2021, Nanoscale)

   Metal-molecule-metal junctions based on alkane thiol (C n T) and oligophenylene thiol (OPT n ) self-assembled monolayers (SAMs) and Au electrodes are expected to exhibit similar electrical asymmetry, as both junctions have one chemisorbed Au–S contact and one physisorbed, van der Waals contact. Asymmetry is quantified by the current rectification ratio RR apparent in the current–voltage ( I – V ) characteristics. Here we show that RR < 1 for C n T and RR > 1 for OPT n junctions, in contrast to expectation, and further, that RR behaves very differently for C n T and OPT n junctions under mechanical extension using the conducting probe atomic force microscopy (CP-AFM) testbed. The analysis presented in this paper, which leverages results from the previously validated single level model and ab initio quantum chemical calculations, allows us to explain the puzzling experimental findings for C n T and OPT n in terms of different current rectification mechanisms. Specifically, in C n T-based junctions the Stark effect creates the HOMO level shifting necessary for rectification, while for OPT n junctions the level shift arises from position-dependent coupling of the HOMO wavefunction with the junction electrostatic potential profile. On the basis of these mechanisms, our quantum chemical calculations allow quantitative description of the impact of mechanical deformation on the measured current rectification. Additionally, our analysis, matched to experiment, facilitates direct estimation of the impact of intramolecular electrostatic screening on the junction potential profile. Overall, our examination of current rectification in benchmark molecular tunnel junctions illuminates key physical mechanisms at play in single step tunneling through molecules, and demonstrates the quantitative agreement that can be obtained between experiment and theory in these systems. 

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5. Determination of the structure and geometry of N-heterocyclic carbenes on Au(111) using high-resolution spectroscopy

   https://doi.org/10.1039/C8SC03502D  

   Lovat, Giacomo; Doud, Evan A.; Lu, Deyu; Kladnik, Gregor; Inkpen, Michael S.; Steigerwald, Michael L.; Cvetko, Dean; Hybertsen, Mark S.; Morgante, Alberto; Roy, Xavier; et al (January 2019, Chemical Science)

   N-heterocyclic carbenes (NHCs) bind very strongly to transition metals due to their unique electronic structure featuring a divalent carbon atom with a lone pair in a highly directional sp 2 -hybridized orbital. As such, they can be assembled into monolayers on metal surfaces that have enhanced stability compared to their thiol-based counterparts. The utility of NHCs to form such robust self-assembled monolayers (SAMs) was only recently recognized and many fundamental questions remain. Here we investigate the structure and geometry of a series of NHCs on Au(111) using high-resolution X-ray photoelectron spectroscopy and density functional theory calculations. We find that the N-substituents on the NHC ring strongly affect the molecule–metal interaction and steer the orientation of molecules in the surface layer. In contrast to previous reports, our experimental and theoretical results provide unequivocal evidence that NHCs with N-methyl substituents bind to undercoordinated adatoms to form flat-lying complexes. In these SAMs, the donor–acceptor interaction between the NHC lone pair and the undercoordinated Au adatom is primarily responsible for the strong bonding of the molecules to the surface. NHCs with bulkier N-substituents prevent the formation of such complexes by forcing the molecules into an upright orientation. Our work provides unique insights into the bonding and geometry of NHC monolayers; more generally, it charts a clear path to manipulating the interaction between NHCs and metal surfaces using traditional coordination chemistry synthetic strategies. 

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