skip to main content


Title: ColumnBurst: a near-storage accelerator for memory-efficient database join queries
We present ColumnBurst, a memory-efficient, near-storage hardware accelerator for database join queries. While the paradigm of near-storage computation has demonstrated performance and efficiency benefits on many workloads by reducing data movement overhead, memory-bound operations such as relational joins on unsorted data have been relatively inefficient with fast modern storage devices, due to the limited capacity and performance of memory available on the near-storage processing engine. ColumnBurst delivers very high performance even on such complex queries, while staying within the memory performance and capacity budget of what is typically already available on off-the-shelf storage devices. ColumnBurst achieves this via a compact, hardware implementation of sorting-based group-by aggregation and join algorithms, instead of the conventional hash-based algorithms. We evaluate ColumnBurst using an FPGA-based prototype with 1 GB of slow on-device DDR3 DRAM, and show that on benchmarks including TPC-H queries with join queries on unsorted columns, it outperforms MonetDB on a 6-core i7 with 32 GB of DRAM by over 7x, and ColumnBurst using a near-storage hash join algorithm by 2x.  more » « less
Award ID(s):
1908507
NSF-PAR ID:
10195753
Author(s) / Creator(s):
;
Date Published:
Journal Name:
roceedings of the 11th ACM SIGOPS Asia-Pacific Workshop on Systems
Page Range / eLocation ID:
9 to 16
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. We describe GraFBoost, a flash-based architecture with hardware acceleration for external analytics of multi-terabyte graphs. We compare the performance of GraFBoost with 1 GB of DRAM against various state-of-the-art graph analytics software including FlashGraph, running on a 32-thread Xeon server with 128 GB of DRAM. We demonstrate that despite the relatively small amount of DRAM, GraFBoost achieves high performance with very large graphs no other system can handle, and rivals the performance of the fastest software platforms on sizes of graphs that existing platforms can handle. Unlike in-memory and semi-external systems, GraFBoost uses a constant amount of memory for all problems, and its performance decreases very slowly as graph sizes increase, allowing GraFBoost to scale to much larger problems than possible with existing systems while using much less resources on a single-node system. The key component of GraFBoost is the sort-reduce accelerator, which implements a novel method to sequentialize fine-grained random accesses to flash storage. The sort-reduce accelerator logs random update requests and then uses hardware-accelerated external sorting with interleaved reduction functions. GraFBoost also stores newly updated vertex values generated in each superstep of the algorithm lazily with the old vertex values to further reduce I/O traffic. We evaluate the performance of GraFBoost for PageRank, breadth-first search and betweenness centrality on our FPGA-based prototype (Xilinx VC707 with 1 GB DRAM and 1 TB flash) and compare it to other graph processing systems including a pure software implementation of GrapFBoost. 
    more » « less
  2. The record-breaking performance of deep neural networks (DNNs) comes with heavy parameter budgets, which leads to external dynamic random access memory (DRAM) for storage. The prohibitive energy of DRAM accesses makes it nontrivial for DNN deployment on resource-constrained devices, calling for minimizing the movements of weights and data in order to improve the energy efficiency. Driven by this critical bottleneck, we present SmartDeal, a hardware-friendly algorithm framework to trade higher-cost memory storage/access for lower-cost computation, in order to aggressively boost the storage and energy efficiency, for both DNN inference and training. The core technique of SmartDeal is a novel DNN weight matrix decomposition framework with respective structural constraints on each matrix factor, carefully crafted to unleash the hardware-aware efficiency potential. Specifically, we decompose each weight tensor as the product of a small basis matrix and a large structurally sparse coefficient matrix whose nonzero elements are readily quantized to the power-of-2. The resulting sparse and readily quantized DNNs enjoy greatly reduced energy consumption in data movement as well as weight storage, while incurring minimal overhead to recover the original weights thanks to the required sparse bit-operations and cost-favorable computations. Beyond inference, we take another leap to embrace energy-efficient training, by introducing several customized techniques to address the unique roadblocks arising in training while preserving the SmartDeal structures. We also design a dedicated hardware accelerator to fully utilize the new weight structure to improve the real energy efficiency and latency performance. We conduct experiments on both vision and language tasks, with nine models, four datasets, and three settings (inference-only, adaptation, and fine-tuning). Our extensive results show that 1) being applied to inference, SmartDeal achieves up to 2.44x improvement in energy efficiency as evaluated using real hardware implementations and 2) being applied to training, SmartDeal can lead to 10.56x and 4.48x reduction in the storage and the training energy cost, respectively, with usually negligible accuracy loss, compared to state-of-the-art training baselines. Our source codes are available at: https://github.com/VITA-Group/SmartDeal. 
    more » « less
  3. null (Ed.)
    The emergence of Intel's Optane DC persistent memory (Optane Pmem) draws much interest in building persistent key-value (KV) stores to take advantage of its high throughput and low latency. A major challenge in the efforts stems from the fact that Optane Pmem is essentially a hybrid storage device with two distinct properties. On one hand, it is a high-speed byte-addressable device similar to DRAM. On the other hand, the write to the Optane media is conducted at the unit of 256 bytes, much like a block storage device. Existing KV store designs for persistent memory do not take into account of the latter property, leading to high write amplification and constraining both write and read throughput. In the meantime, a direct re-use of a KV store design intended for block devices, such as LSM-based ones, would cause much higher read latency due to the former property. In this paper, we propose ChameleonDB, a KV store design specifically for this important hybrid memory/storage device by considering and exploiting these two properties in one design. It uses LSM tree structure to efficiently admit writes with low write amplification. It uses an in-DRAM hash table to bypass LSM-tree's multiple levels for fast reads. In the meantime, ChameleonDB may choose to opportunistically maintain the LSM multi-level structure in the background to achieve short recovery time after a system crash. ChameleonDB's hybrid structure is designed to be able to absorb sudden bursts of a write workload, which helps avoid long-tail read latency. Our experiment results show that ChameleonDB improves write throughput by 3.3× and reduces read latency by around 60% compared with a legacy LSM-tree based KV store design. ChameleonDB provides performance competitive even with KV stores using fully in-DRAM index by using much less DRAM space. Compared with CCEH, a persistent hash table design, ChameleonDB provides 6.4× higher write throughput. 
    more » « less
  4. Abstract The join and group-by aggregation are two memory intensive operators that are affecting the performance of relational databases. Hashing is a common approach used to implement both operators. Recent paradigm shifts in multi-core processor architectures have reinvigorated research into how the join and group-by aggregation operators can leverage these advances. However, the poor spatial locality of the hashing approach has hindered performance on multi-core processor architectures which rely on using large cache hierarchies for latency mitigation. Multithreaded architectures can better cope with poor spatial locality by masking memory latency with many outstanding requests. Nevertheless, the number of parallel threads, even in the most advanced multithreaded processors, such as UltraSPARC, is not enough to fully cover the main memory access latency. In this paper, we explore the hardware re-configurability of FPGAs to enable deeper execution pipelines that maintain hundreds (instead of tens) of outstanding memory requests across four FPGAs-drastically increasing concurrency and throughput. We present two end-to-end in-memory accelerators for the join and group-by aggregation operators using FPGAs. Both accelerators use massive multithreading to mask long memory delays of traversing linked-list data structures, while concurrently managing hundreds of thread states across four FPGAs locally. We explore how content addressable memories can be intermixed within our multithreaded designs to act as a synchronizing cache , which enforces locks and merges jobs together before they are written to memory. Throughput results for our hash-join operator accelerator show a speedup between 2 $$\times $$ × and 3.4 $$\times $$ × over the best multi-core approaches with comparable memory bandwidths on uniform and skewed datasets. The accelerator for the hash-based group-by aggregation operator demonstrates that leveraging CAMs achieves average speedup of 3.3 $$\times $$ × with a best case of 9.4 $$\times $$ × in terms of throughput over CPU implementations across five types of data distributions. 
    more » « less
  5. With slowing technology scaling, specialized accelerators are increasingly attractive solutions to continue expected generational scaling of performance. However, in order to accelerate more advanced algorithms or those from challenging domains, supporting \emph{data-dependence} becomes necessary. This manifests as either data-dependent control (eg. join two sparse lists), or data-dependent memory accesses (eg. hash-table access). These forms of data-dependence inherently couple compute with memory, and also preclude efficient vectorization -- defeating the traditional mechanisms of programmable accelerators (eg. GPUs). Our goal is to develop an accelerator which is broadly applicable across algorithms with and without data-dependence. To this end, we first identify forms of data-dependence which are both common and possible to exploit with specialized hardware: specifically stream-join and alias-free indirection. Then, we create an accelerator with an interface to support these, called the Sparse Processing Unit (SPU). SPU supports alias-free indirection with a compute-enabled scratchpad and aggressive stream reordering and stream-join with a novel dataflow control model for a reconfigurable systolic compute-fabric. Finally, we add robustness across datatypes by adding decomposability across the compute and memory pipelines. SPU achieves 16.5$\times$, 10.3x, and 14.2x over a 24-core SKL CPU on ML, database, and graph algorithms respectively. SPU achieves similar performance to domain-specific accelerators. For ML, SPU achieves 1.8-7x speedup against a similarly provisioned GPGPU, with much less area and power. 
    more » « less