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1. Tidal Modulation of Ice Streams: Effect of Periodic Sliding Velocity on Ice Friction and Healing

   https://doi.org/10.3389/feart.2022.719074  

   McCarthy, Christine ; Skarbek, Rob M. ; Savage, Heather M. ( April 2022 , Frontiers in Earth Science)

   Basal slip along glaciers and ice streams can be significantly modified by external time-dependent forcing, although it is not clear why some systems are more sensitive to tidal stresses. We have conducted a series of laboratory experiments to explore the effect of time varying load point velocity on ice-on-rock friction. Varying the load point velocity induces shear stress forcing, making this an analogous simulation of aspects of ice stream tidal modulation. Ambient pressure, double-direct shear experiments were conducted in a cryogenic servo-controlled biaxial deformation apparatus at temperatures between −2°C and −16°C. In addition to a background, median velocity (1 and 10 μm/s), a sinusoidal velocity was applied to the central sliding sample over a range of periods and amplitudes. Normal stress was held constant over each run (0.1, 0.5 or 1 MPa) and the shear stress was measured. Over the range of parameters studied, the full spectrum of slip behavior from creeping to slow-slip to stick-slip was observed, similar to the diversity of sliding styles observed in Antarctic and Greenland ice streams. Under conditions in which the amplitude of oscillation is equal to the median velocity, significant healing occurs as velocity approaches zero, causing a high-amplitude change in friction. The amplitude ofmore »the event increases with increasing period (i.e. hold time). At high normal stress, velocity oscillations force an otherwise stable system to behave unstably, with consistently-timed events during every cycle. Rate-state friction parameters determined from velocity steps show that the ice-rock interface is velocity strengthening. A companion paper describes a method of analyzing the oscillatory data directly. Forward modeling of a sinusoidally-driven slider block, using rate-and-state dependent friction formulation and experimentally derived parameters, successfully predicts the experimental output in all but a few cases.« less
2. U-Pb dating of titanite by LA-ICP-QQQ-MS

   Stone, Joshua S ; Cruz-Uribe, AM ; Brooks, HL ( May 2019 , North American Workshop on Laser Ablation 2019 Abstracts)

   Titanite has the ability to incorporate significant amounts of common Pb, which leads to uncertainty when applying the U-Pb decay series for geochronology. The isobaric interference of 204Hg on 204Pb poses an additional complexity in applying common Pb corrections. Here we investigate the removal of 204Hg interferences during titanite U-Pb dating using reaction cell gas chemistry via triple quadrupole mass spectrometry. U-Pb dates were determined for the natural titanite reference materials MKED-1 and BLR1 using an ESI NWR193UC excimer laser coupled to an Agilent 8900 ‘triple quad’ mass spectrometer. The 8900 is equipped with an octopole collision/reaction cell, which enables online interference removal. Two experiments were run, one in which we collected data in NoGas mode, and one in which NH3 was used as a reaction cell gas in MS/MS mode, in order to assess the feasibility of determining U/Pb ratios with mass shifted isotopes. In all experiments, a signal smoothing device was placed inline just before the ICP-MS interface, downstream from the addition of the Ar nebulizer gas to the He carrier gas stream. For the NoGas experiment, titanite was ablated using a 25 µm spot, with a beam energy density of 3 J/cm2, and a pulse rate ofmore »4 Hz. In NoGas mode, signal intensities for the isotopes 201Hg, 202Hg, 204Pb, 206Pb, 207Pb, 232Th, 235U, and 238U were counted. In MS/MS mode, titanite was ablated using a 40 µm spot, with a beam energy density of 5 J/cm2, and a pulse rate of 4 Hz. A larger spot size in this experiment was used to counteract the decrease in signal intensity due to use of the reaction cell. In MS/MS mode, NH3 was flowed through the reaction cell in order to enable a charge transfer reaction between NH3 and Hg+, effectively neutralizing Hg. The isotopes 201Hg, 202Hg, 204Pb, 206Pb, and 207Pb were measured on-mass, as the isotopes of Pb are not affected by the NH3 gas. Uranium and Th both exhibit partial reaction with NH3 gas; therefore, the isotopes 232Th, 235U, and 238U were measured mass-shifted up 15 mass units, at masses 247, 250, and 253 respectively. Ratios of 207Pb/235U, 206Pb/238U, and 207Pb/206Pb were determined using the UPbGeochron4 DRS in Iolite (v.3.71) with MKED-1 as the primary reference material. Dates were calculated using IsoplotR by applying the Stacey-Kramers correction for common Pb. All isotopes of Hg were effectively neutralized by the NH3 charge transfer reaction in MS/MS mode; zero counts were detected for Hg isotopes. Dates for the BLR-1 titanite were 1050.55 ± 2.72 (2σ, n=12) Ma in NoGas mode, and 1048 ± 1.88 (2σ, n=15) Ma in MS/MS mode. These dates are in excellent agreement with the TIMS 206Pb/238U date for the BLR-1 titanite of 1047.1 ± 0.4 Ma. This method has the potential to enable measurement of 204Pb without needing to correct for Hg interferences.« less
3. Triple oxygen isotope evidence for a hot Archean ocean

   https://doi.org/10.1130/G50230.1  

   McGunnigle, J.P. ; Cano, E.J. ; Sharp, Z.D. ; Muehlenbachs, K. ; Cole, D. ; Hardman, M.F. ; Stachel, T. ; Pearson, D.G. ( May 2022 , Geology)

   Triple oxygen isotope (δ17O and δ18O) values of high- and low-temperature altered oceanic crust and products of basalt alteration experiments were measured to better constrain ocean isotope compositions in deep time. The data define an array of δ18O and Δ′17O (Δ′17O=δ′17O – λRL × δ′18O + γ) values from mantle values toward 1‰ and –0.01‰, respectively, with a λ of ~0.523. The altered oceanic crust data were used to construct a model for estimating δ18O-Δ′17O values of the ancient oceans if the continental weathering flux (FCW) and/or hydrothermal oceanic crust alteration flux (FHT) changed through time. A maximum lowering of 7‰ and 4‰, respectively, is achieved in the most extreme cases. The δ18O value of the ocean cannot be raised by more than 1.1‰. Eclogites from the Roberts Victor kimberlite (South Africa), with a protolith age of 3.1 Ga, have δ18O-Δ′17O values that precisely overlap with those of the modern altered oceanic crust, suggesting that the Archean oceans had similar isotope values as today. Published triple isotope data for Archean cherts show that all samples have been altered to some degree and suggest an Archean ocean surface temperature of ~70–100 °C. An ocean as light as –2‰ is still consistentmore »with our eclogite data and reduce our temperature estimates by 10 °C.« less
4. The phase diagrams of beryllium and magnesium oxide at megabar pressures

   https://doi.org/10.1088/1361-648X/ac4b2a  

   Wu, Jizhou ; González-Cataldo, Felipe ; Soubiran, François ; Militzer, Burkhard ( February 2022 , Journal of Physics: Condensed Matter)

   Abstract We perform ab initio simulations of beryllium (Be) and magnesium oxide (MgO) at megabar pressures and compare their structural and thermodynamic properties. We make a detailed comparison of our two recently derived phase diagrams of Be (Wu et al 2021 Phys. Rev. B 104 014103) and MgO (Soubiran and Militzer 2020 Phys. Rev. Lett. 125 175701) using the thermodynamic integration technique, as they exhibit striking similarities regarding their shape. We explore whether the Lindemann criterion can explain the melting temperatures of these materials through the calculation of the Debye temperature at high pressure. From our free energy calculations, we find that the melting line of both materials is well represented by the Simon–Glazel fit T m ( P ) = T 0 (1 + P / a ) 1/ c , where T 0 = 1564 K, a = 15.8037 GPa and c = 2.4154 for Be, while T 0 = 3010 K, a = 10.5797 GPa and c = 2.8683 for the MgO in the B1. For the B2 phase, we use the values a = 26.1163 GPa and c = 2.2426. Both materials exhibit negative Clapeyron slopes on the boundaries between the two solid phases that are stronglymore »affected by anharmonic effects, which also influence the location of the solid–solid–liquid triple point. We find that the quasi-harmonic approximation underestimates the stability range of the low-pressure phases, namely hcp for Be and B1 for MgO. We also compute the phonon dispersion relations at low and high pressure for each of the phases of these materials, and also explore how the phonon density of states is modified by temperature. Finally, we derive secondary shock Hugoniot curves in addition to the principal Hugoniot curve for both materials, and study their offsets in pressure between solid and liquid branches.« less
5. Identification of Genes Encoding Enzymes Catalyzing the Early Steps of Carrot Polyacetylene Biosynthesis

   https://doi.org/https://doi.org/10.1104/pp.18.01195  

   Lucas Busta, Won Cheol ( December 2018 , Plant physiology)

   Polyacetylenic lipids accumulate in various Apiaceae species after pathogen attack, suggesting that these compounds are naturally occurring pesticides and potentially valuable resources for crop improvement. These compounds also promote human health and slow tumor growth. Even though polyacetylenic lipids were discovered decades ago, the biosynthetic pathway underlying their production is largely unknown. To begin filling this gap and ultimately enable polyacetylene engineering, we studied polyacetylenes and their biosynthesis in the major Apiaceae crop carrot (Daucus carota subsp. sativus). Using gas chromatography and mass spectrometry, we identified three known polyacetylenes and assigned provisional structures to two novel polyacetylenes. We also quantified these compounds in carrot leaf, petiole, root xylem, root phloem, and root periderm extracts. Falcarindiol and falcarinol predominated and accumulated primarily in the root periderm. Since the multiple double and triple carbon-carbon bonds that distinguish polyacetylenes from ubiquitous fatty acids are often introduced by Δ12 oleic acid desaturase (FAD2)-type enzymes, we mined the carrot genome for FAD2 genes. We identified a FAD2 family with an unprecedented 24 members and analyzed public, tissue-specific carrot RNA-Seq data to identify coexpressed members with root periderm-enhanced expression. Six candidate genes were heterologously expressed individually and in combination in yeast and Arabidopsis (Arabidopsis thaliana), resultingmore »in the identification of one canonical FAD2 that converts oleic to linoleic acid, three divergent FAD2-like acetylenases that convert linoleic into crepenynic acid, and two bifunctional FAD2s with Δ12 and Δ14 desaturase activity that convert crepenynic into the further desaturated dehydrocrepenynic acid, a polyacetylene pathway intermediate. These genes can now be used as a basis for discovering other steps of falcarin-type polyacetylene biosynthesis, to modulate polyacetylene levels in plants, and to test the in planta function of these molecules. Many organisms implement specialized biochemical pathways to convert ubiquitous metabolites into bioactive chemical compounds. Since plants comprise the majority of the human diet, specialized plant metabolites play crucial roles not only in crop biology but also in human nutrition. Some asterids produce lipid compounds called polyacetylenes (for review, see Negri, 2015) that exhibit antifungal activity (Garrod et al., 1978; Kemp, 1978; Harding and Heale, 1980, 1981; Olsson and Svensson, 1996) and accumulate in response to fungal phytopathogen attack (De Wit and Kodde, 1981; Elgersma and Liem, 1989). These observations have led to the longstanding hypothesis that polyacetylenes are natural pesticides. These same lipid compounds exhibit cytotoxic activity against human cancer cell lines and slow tumor growth (Fujimoto and Satoh, 1988; Matsunaga et al., 1989, 1990; Cunsolo et al., 1993; Bernart et al., 1996; Kobaek-Larsen et al., 2005; Zidorn et al., 2005), making them important nutritional compounds. The major source of polyacetylenes in the human diet is carrot (Daucus carota L.). Carrot is one of the most important crop species in the Apiaceae, with rapidly increasing worldwide cultivation (Rubatzky et al., 1999; Dawid et al., 2015). The most common carrot polyacetylenes are C17 linear aliphatic compounds containing two conjugated carbon-carbon triple bonds, one or two carbon-carbon double bonds, and a diversity of additional in-chain oxygen-containing functional groups. In carrot, the most abundant of these compounds are falcarinol and falcarindiol (Dawid et al., 2015). Based on their structures, it has been hypothesized that these compounds (alias falcarin-type polyacetylenes) are derived from ubiquitous fatty acids. Indeed, biochemical investigations (Haigh et al., 1968; Bohlman, 1988), radio-chemical tracer studies (Barley et al., 1988), and the discovery of pathway intermediates (Jones et al., 1966; Kawazu et al., 1973) implicate a diversion of flux away from linolenate biosynthesis as the entry point into falcarin-type polyacetylene biosynthesis (for review, see Minto and Blacklock, 2008). The final steps of linolenate biosynthesis are the conversion of oleate to linoleate, mediated by fatty acid desaturase 2 (FAD2), and linoleate to linolenate, catalyzed by FAD3. Some plant species contain divergent forms of FAD2 that, instead of or in addition to converting oleate to linoleate, catalyze the installation of unusual in-chain functional groups such as hydroxyl groups, epoxy groups, conjugated double bonds, or carbon-carbon triple bonds into the acyl chain (Badami and Patil, 1980) and thus divert flux from linolenate production into the accumulation of unusual fatty acids. Previous work in parsley (Petroselinum crispum; Apiaceae) identified a divergent form of FAD2 that (1) was up-regulated in response to pathogen treatment and (2) when expressed in soybean embryos resulted in production of the monoyne crepenynate and, by the action of an unassigned enzyme, dehydrocrepenynate (Kirsch et al., 1997; Cahoon et al., 2003). The results of the parsley studies are consistent with a pathogen-responsive, divergent FAD2-mediated pathway that leads to acetylenic fatty acids. However, information regarding the branch point into acetylenic fatty acid production in agriculturally relevant carrot is still largely missing, in particular, the identification and functional characterization of enzymes that can divert carbon flux away from linolenate biosynthesis into the production of dehydrocrepenynate and ultimately falcarin-type polyacetylenes. Such genes, once identified, could be used in the future design of transgenic carrot lines with altered polyacetylene content, enabling direct testing of in planta polyacetylene function and potentially the engineering of pathogen-resistant, more nutritious carrots. These genes could also provide the foundation for further investigations of more basic aspects of plant biology, including the evolution of fatty acid-derived natural product biosynthesis pathways across the Asterid clade, as well as the role of these pathways and compounds in plant ecology and plant defense. Recently, a high-quality carrot genome assembly was released (Iorizzo et al., 2016), providing a foundation for genome-enabled studies of Apiaceous species. This study also provided publicly accessible RNA sequencing (RNA-Seq) data from diverse carrot tissues. Using these resources, this study aimed to provide a detailed gas chromatography-based quantification of polyacetylenes in carrot tissues for which RNA-Seq data are available, then combine this information with bioinformatics analysis and heterologous expression to identify and characterize biosynthetic genes that underlie the major entry point into carrot polyacetylene biosynthesis. To achieve these goals, thin-layer chromatography (TLC) was combined with gas chromatography-mass spectrometry (GC-MS) and gas chromatography-flame ionization detection to identify and quantify polyacetylenic metabolites in five different carrot tissues. Then the sequences and tissue expression profiles of potential FAD2 and FAD2-like genes annotated in the D. carota genome were compared with the metabolite data to identify candidate pathway genes, followed by biochemical functionality tests using yeast (Saccharomyces cerevisae) and Arabidopsis (Arabidopsis thaliana) as heterologous expression systems.« less