skip to main content


Title: Small mammal community composition varies among Ozark glades
Abstract Island biogeography theory (IBT) explains and estimates large-scale ecological patterns among islands and isolated habitat patches. Specifically, IBT predicts that the number of species per habitat patch differs as a function of area and isolation as a result of local colonization and extinction. Accurate estimates of species richness are essential for testing predictions of IBT, but differences in detectability of species can lead to bias in empirical data. Hierarchical community models correct for imperfect detection by leveraging information from across the community to estimate species-specific occupancy and detection probabilities. Using the fragmented Ozark glades as our model system, we constructed a hierarchical community model to 1) estimate site-level and regional species richness of small mammals while correcting for detection error, and 2) determine environmental covariates driving occupancy. We sampled 16 glades in southwestern Missouri in summer 2016–2017 and quantified mammal community structure within the glade network. The detected species pool included eight species, and the model yielded a regional species estimate of 8.6 species, with a mean of 3.47 species per glade. Species richness increased with patch area but not isolation, and effects of patch shape varied between species in the community.  more » « less
Award ID(s):
1735316
NSF-PAR ID:
10204867
Author(s) / Creator(s):
;
Editor(s):
Powell, Roger
Date Published:
Journal Name:
Journal of Mammalogy
Volume:
100
Issue:
6
ISSN:
0022-2372
Page Range / eLocation ID:
1774 to 1782
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Abstract

    Camera traps deployed in grids or stratified random designs are a well‐established survey tool for wildlife but there has been little evaluation of study design parameters.

    We used an empirical subsampling approach involving 2,225 camera deployments run at 41 study areas around the world to evaluate three aspects of camera trap study design (number of sites, duration and season of sampling) and their influence on the estimation of three ecological metrics (species richness, occupancy and detection rate) for mammals.

    We found that 25–35 camera sites were needed for precise estimates of species richness, depending on scale of the study. The precision of species‐level estimates of occupancy (ψ) was highly sensitive to occupancy level, with <20 camera sites needed for precise estimates of common (ψ > 0.75) species, but more than 150 camera sites likely needed for rare (ψ < 0.25) species. Species detection rates were more difficult to estimate precisely at the grid level due to spatial heterogeneity, presumably driven by unaccounted habitat variability factors within the study area. Running a camera at a site for 2 weeks was most efficient for detecting new species, but 3–4 weeks were needed for precise estimates of local detection rate, with no gains in precision observed after 1 month. Metrics for all mammal communities were sensitive to seasonality, with 37%–50% of the species at the sites we examined fluctuating significantly in their occupancy or detection rates over the year. This effect was more pronounced in temperate sites, where seasonally sensitive species varied in relative abundance by an average factor of 4–5, and some species were completely absent in one season due to hibernation or migration.

    We recommend the following guidelines to efficiently obtain precise estimates of species richness, occupancy and detection rates with camera trap arrays: run each camera for 3–5 weeks across 40–60 sites per array. We recommend comparisons of detection rates be model based and include local covariates to help account for small‐scale variation. Furthermore, comparisons across study areas or times must account for seasonality, which could have strong impacts on mammal communities in both tropical and temperate sites.

     
    more » « less
  2. Abstract

    As the quality and quantity of natural habitats decrease, pressure increases to better understand species–habitat interactions and how animal communities respond to habitat changes. We assessed the relative importance of local habitat heterogeneity and productivity measures as predictors of avian species richness and compared these results to models for species of conservation concern (SCC). We derived three‐dimensional habitat heterogeneity and productivity measures from light detection and ranging data and hyperspectral imagery, and then used a Bayesian multi‐species hierarchical framework to model avian species richness and occupancy. We found both habitat heterogeneity and productivity were important factors for determining avian community richness. Three‐dimensional habitat heterogeneity and productivity metrics accurately predicted species richness at a local scale and were especially important to use within habitat guilds (i.e., alpha diversity). When scaling up to community richness across multiple habitat types (i.e., gamma diversity), two‐dimensional (surface level) productivity and heterogeneity metrics became important additions to the three‐dimensional metrics when estimating total avian richness. We also tested the utility of these metrics for predicting occupancy of SCC and compared community‐level relationships to species‐specific relationships. Species of conservation concern differed from the broader avian community with regard to local habitat heterogeneity and productivity measures. Species of conservation concern had different relationship habitat metrics than the greater avian community. Three‐dimensional measures of habitat heterogeneity and productivity predicted avian richness across the landscape, yet also highlighted the different habitat structure needs of SCC compared with the greater avian community.

     
    more » « less
  3. For a half century, habitat configuration – the arrangement of habitat patches within a landscape – has been central to theories of landscape ecology, population dynamics, and community assembly, in addition to conservation strategies. A recent hypothesis advanced by Fahrig (2013) would, if supported, greatly diminish the relevance of habitat configuration as a predictor of diversity. The Habitat Amount Hypothesis posits that the sample area effect overrides patch size and patch isolation effects of habitat fragmentation on species richness. It predicts that the amount of habitat in a local landscape, regardless of configuration, is the main landscape‐level determinant of species richness. If habitat amount is indeed the major, landscape‐level driver of species richness, the slopes of the species–area relationship (SAR) for otherwise similar fragmented and unfragmented landscapes should be indistinguishable. We tested the Habitat Amount Hypothesis with data from two replicated and controlled habitat fragmentation experiments that disentangle the effects of habitat amount and configuration. One experiment provided time‐series data on plant species richness and the other on micro‐arthropod species richness. We found that, relative to less fragmented habitats, the SARs for fragmented habitats have significantly higher slopes and that the magnitude of the difference in slopes increased over time. Relatively more species were lost in smaller areas when fragments were more isolated. In both experiments, the proportion of species lost due to increased habitat fragmentation was nearly identical to the proportion lost due to reduced habitat amount. Our results provide a direct and experimentally derived refutation of the Habitat Amount Hypothesis, supporting the long‐held view that in addition to area, patch isolation and configuration are important determinants of species richness. Differences in species richness between fragmented and non‐fragmented habitats increase over time, demonstrating that long‐term studies are needed to understand the effects of fragmentation, above and beyond the amount of habitat lost.

     
    more » « less
  4. Abstract

    1. The occurrence and distributions of wildlife populations and communities are shifting as a result of global changes. To evaluate whether these shifts are negatively impacting biodiversity processes, it is critical to monitor the status, trends and effects of environmental variables on entire communities. However, modelling the dynamics of multiple species simultaneously can require large amounts of diverse data, and few modelling approaches exist to simultaneously provide species and community‐level inferences.

    2. We present an ‘integrated community occupancy model’ (ICOM) that unites principles of data integration and hierarchical community modelling in a single framework to provide inferences on species‐specific and community occurrence dynamics using multiple data sources. The ICOM combines replicated and nonreplicated detection–nondetection data sources using a hierarchical framework that explicitly accounts for different detection and sampling processes across data sources. We use simulations to compare the ICOM to previously developed hierarchical community occupancy models and single species integrated distribution models. We then apply our model to assess the occurrence and biodiversity dynamics of foliage‐gleaning birds in the White Mountain National Forest in the northeastern USA from 2010 to 2018 using three independent data sources.

    3. Simulations reveal that integrating multiple data sources in the ICOM increased precision and accuracy of species and community‐level inferences compared to single data source models, although benefits of integration were dependent on the information content of individual data sources (e.g. amount of replication). Compared to single species models, the ICOM yielded more precise species‐level estimates. Within our case study, the ICOM had the highest out‐of‐sample predictive performance compared to single species models and models that used only a subset of the three data sources.

    4. The ICOM provides more precise estimates of occurrence dynamics compared to multi‐species models using single data sources or integrated single‐species models. We further found that the ICOM had improved predictive performance across a broad region of interest with an empirical case study of forest birds. The ICOM offers an attractive approach to estimate species and biodiversity dynamics, which is additionally valuable to inform management objectives of both individual species and their broader communities.

     
    more » « less
  5. Abstract

    The structure of local ecological communities is thought to be determined by a series of hierarchical abiotic and biotic filters which select for or against species based on their traits. Many human impacts, like fragmentation, serve to alter environmental conditions across a range of spatial scales and may impact trait–environment interactions.

    We examined the effects of environmental variation associated with habitat fragmentation of seagrass habitat measured from microhabitat to landscape scales in controlling the taxonomic and trait‐based community structure of benthic fauna.

    We measured patterns in species abundance and biomass of seagrass epifauna and infauna sampled using sediment cores from 86 sites (across 21 meadows) in Back Sound, North Carolina, USA. We related local faunal community structure to environmental variation measured at three spatial scales (microhabitat, patch and landscape). Additionally, we tested the value of species traits in predicting species‐specific responses to habitat fragmentation across scales.

    While univariate measures of faunal communities (i.e. total density, biomass and species richness) were positively related to microhabitat‐scale seagrass biomass only, overall community structure was predicted by environmental variation at the microhabitat, patch (i.e. patch size) and landscape (i.e. number of patches, landscape seagrass area) scales. Furthermore, fourth‐corner analysis revealed that species traits explained as much variation in organismal densities as species identity. For example, species with planktonic‐dispersing larvae and deposit‐feeding trophic modes were more abundant in contiguous, high seagrass cover landscapes while suspension feeders favoured more fragmented landscapes.

    We present quantitative evidence supporting hierarchal models of community assembly which predict that interactions between species traits and environmental variation across scales ultimately drive local community composition. Variable responses of individual traits to multiple environmental variables suggest that community assembly processes that act on species via traits related to dispersal, mobility and trophic mode will be altered under habitat fragmentation. Additionally, with increasing global temperatures, the tropical seagrassHalodule wrightiiis predicted to replace the temperateZostera marinaas the dominate seagrass in our study region, therefore potentially favouring species with planktonic‐dispersing larva and weakening the strength of environmental control on community assembly.

     
    more » « less