An official website of the United States government
Studies in atomic-scale modeling of surface phase equilibria often focus on temperatures near zero Kelvin due to the challenges in calculating the free energy of surfaces at finite temperatures. The Bayesian-inference-based nested sampling (NS) algorithm allows for modeling phase equilibria at arbitrary temperatures by directly and efficiently calculating the partition function, whose relationship with free energy is well known. This work extends NS to calculate adsorbate phase diagrams, incorporating all relevant configurational contributions to the free energy. We apply NS to the adsorption of Lennard-Jones (LJ) gas particles on low-index and vicinal LJ solid surfaces and construct the canonical partition function from these recorded energies to calculate ensemble averages of thermodynamic properties, such as the constant-volume heat capacity and order parameters that characterize the structure of adsorbate phases. Key results include determining the nature of phase transitions of adsorbed LJ particles on flat and stepped LJ surfaces, which typically feature an enthalpy-driven condensation at higher temperatures and an entropy-driven reordering process at lower temperatures, and the effect of surface geometry on the presence of triple points in the phase diagrams. Overall, we demonstrate the ability and potential of NS for surface modeling.
more »
« less
Accurate simulation of surfaces and interfaces of ten FCC metals and steel using Lennard–Jones potentials
Abstract The earlier integration of validated Lennard–Jones (LJ) potentials for 8 fcc metals into materials and biomolecular force fields has advanced multiple research fields, for example, metal–electrolyte interfaces, recognition of biomolecules, colloidal assembly of metal nanostructures, alloys, and catalysis. Here we introduce 12-6 and 9-6 LJ parameters for classical all-atom simulations of 10 further fcc metals (Ac, Ca (α), Ce (γ), Es (β), Fe (γ), Ir, Rh, Sr (α), Th (α), Yb (β)) and stainless steel. The parameters reproduce lattice constants, surface energies, water interfacial energies, and interactions with (bio)organic molecules in 0.1 to 5% agreement with experiment, as well as qualitative mechanical properties under standard conditions. Deviations are reduced up to a factor of one hundred in comparison to earlier Lennard–Jones parameters, embedded atom models, and density functional theory. We also explain a quantitative correlation between atomization energies from experiments and surface energies that supports parameter development. The models are computationally very efficient and applicable to an exponential space of alloys. Compatibility with a wide range of force fields such as the Interface force field (IFF), AMBER, CHARMM, COMPASS, CVFF, DREIDING, OPLS-AA, and PCFF enables reliable simulations of nanostructures up to millions of atoms and microsecond time scales. User-friendly model building and input generation are available in the CHARMM-GUI Nanomaterial Modeler. As a limitation, deviations in mechanical properties vary and are comparable to DFT methods. We discuss the incorporation of reactivity and features of the electronic structure to expand the range of applications and further increase the accuracy.
more »
« less
- PAR ID:
- 10211803
- Publisher / Repository:
- Nature Publishing Group
- Date Published:
- Journal Name:
- npj Computational Materials
- Volume:
- 7
- Issue:
- 1
- ISSN:
- 2057-3960
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Molybdenum disulfide (MoS 2 ) is a layered material with outstanding electrical and optical properties. Numerous studies evaluate the performance in sensors, catalysts, batteries, and composites that can benefit from guidance by simulations in all-atom resolution. However, molecular simulations remain difficult due to lack of reliable models. We introduce an interpretable force field for MoS 2 with record performance that reproduces structural, interfacial, and mechanical properties in 0.1% to 5% agreement with experiments. The model overcomes structural instability, deviations in interfacial and mechanical properties by several 100%, and empirical fitting protocols in earlier models. It is compatible with several force fields for molecular dynamics simulation, including the interface force field (IFF), CVFF, DREIDING, PCFF, COMPASS, CHARMM, AMBER, and OPLS-AA. The parameters capture polar covalent bonding, X-ray structure, cleavage energy, infrared spectra, bending stability, bulk modulus, Young's modulus, and contact angles with polar and nonpolar solvents. We utilized the models to uncover the binding mechanism of peptides to the MoS 2 basal plane. The binding strength of several 7mer and 8mer peptides scales linearly with surface contact and replacement of surface-bound water molecules, and is tunable in a wide range from −86 to −6 kcal mol −1 . The binding selectivity is multifactorial, including major contributions by van-der-Waals coordination and charge matching of certain side groups, orientation of hydrophilic side chains towards water, and conformation flexibility. We explain the relative attraction and role of the 20 amino acids using computational and experimental data. The force field can be used to screen and interpret the assembly of MoS 2 -based nanomaterials and electrolyte interfaces up to a billion atoms with high accuracy, including multiscale simulations from the quantum scale to the microscale.more » « less
-
The potential energy curves (PECs) for the homonuclear He–He, Ar–Ar, Cu–Cu, and Si–Si dimers, as well as heteronuclear Cu–He, Cu–Ar, Cu–Xe, Si–He, Si–Ar, and Si–Xe dimers, are obtained in quantum Monte Carlo (QMC) calculations. It is shown that the QMC method provides the PECs with an accuracy comparable with that of the state-of-the-art coupled cluster singles and doubles with perturbative triples corrections [CCSD(T)] calculations. The QMC data are approximated by the Morse long range (MLR) and (12-6) Lennard-Jones (LJ) potentials. The MLR and LJ potentials are used to calculate the deflection angles in binary collisions of corresponding atom pairs and transport coefficients of Cu and Si vapors and their mixtures with He, Ar, and Xe gases in the range of temperature from 100 K to 10 000 K. It is shown that the use of the LJ potentials introduces significant errors in the transport coefficients of high-temperature vapors and gas mixtures. The mixtures with heavy noble gases demonstrate anomalous behavior when the viscosity and thermal conductivity can be larger than that of the corresponding pure substances. In the mixtures with helium, the thermal diffusion factor is found to be unusually large. The calculated viscosity and diffusivity are used to determine parameters of the variable hard sphere and variable soft sphere molecular models as well as parameters of the power-law approximations for the transport coefficients. The results obtained in the present work include all information required for kinetic or continuum simulations of dilute Cu and Si vapors and their mixtures with He, Ar, and Xe gases.more » « less
-
β-titanium (β-Ti) alloys are useful in diverse industries because their mechanical properties can be tuned by transforming the metastable β phase into other metastable and stable phases. Relationships between lattice parameter and β-Ti alloy concentrations have been explored, but the lattice parameter evolution during β-phase transformations is not well understood. In this work, the β-Ti alloys, Ti-11Cr, Ti-11Cr-0.85Fe, Ti-11Cr-5.3Al, and Ti-11Cr-0.85Fe-5.3Al (all in at.%), underwent a 400 °C aging treatment for up to 12 h to induce the β-to-ω and β-to-α phase transformations. Phase identification and lattice parameters were measured in situ using high-temperature X-ray diffraction. Phase compositions were measured ex situ using atom probe tomography. During the phase transformations, Cr and Fe diffused from the ω and α phases into the β matrix, and the β-phase lattice parameter exhibited a corresponding decrease. The decrease in β-phase lattice parameter affected the α- and ω-phase lattice parameters. The α phase in the Fe-free alloys exhibited α-phase c/a ratios close to those of pure Ti. A larger β-phase composition change in Ti-11Cr resulted in larger ω-phase lattice parameter changes than in Ti-11Cr-0.85Fe. This work illuminates the complex relationship between diffusion, composition, and structure for these diffusive/displacive transformations.more » « less
-
null (Ed.)Abstract The restrained electrostatic potential (RESP) approach is a highly regarded and widely used method of assigning partial charges to molecules for simulations. RESP uses a quantum-mechanical method that yields fortuitous overpolarization and thereby accounts only approximately for self-polarization of molecules in the condensed phase. Here we present RESP2, a next generation of this approach, where the polarity of the charges is tuned by a parameter, δ, which scales the contributions from gas- and aqueous-phase calculations. When the complete non-bonded force field model, including Lennard-Jones parameters, is optimized to liquid properties, improved accuracy is achieved, even with this reduced set of five Lennard-Jones types. We argue that RESP2 with δ ≈ 0.6 (60% aqueous, 40% gas-phase charges) is an accurate and robust method of generating partial charges, and that a small set of Lennard-Jones types is a good starting point for a systematic re-optimization of this important non-bonded term.more » « less
