skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


Title: A Statistical Growth Property of Plant Root Architectures
Numerous types of biological branching networks, with varying shapes and sizes, are used to acquire and distribute resources. Here, we show that plant root and shoot architectures share a fundamental design property. We studied the spatial density function of plant architectures, which specifies the probability of finding a branch at each location in the 3-dimensional volume occupied by the plant. We analyzed 1645 root architectures from four species and discovered that the spatial density functions of all architectures are population-similar. This means that despite their apparent visual diversity, all of the roots studied share the same basic shape, aside from stretching and compression along orthogonal directions. Moreover, the spatial density of all architectures can be described as variations on a single underlying function: a Gaussian density truncated at a boundary of roughly three standard deviations. Thus, the root density of any architecture requires only four parameters to specify: the total mass of the architecture and the standard deviations of the Gaussian in the three x , y , z growth directions. Plant shoot architectures also follow this design form, suggesting that two basic plant transport systems may use similar growth strategies.  more » « less
Award ID(s):
2026342
PAR ID:
10218280
Author(s) / Creator(s):
; ; ; ; ;
Date Published:
Journal Name:
Plant Phenomics
Volume:
2020
ISSN:
2643-6515
Page Range / eLocation ID:
1 to 11
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Abstract The gaseous plant hormone ethylene is a key developmental and growth regulator, and a pivotal endogenous response signal to abiotic and biotic interactions, including stress. Much of what is known about ethylene biosynthesis, perception, and signaling comes from decades of research primarily in Arabidopsis thaliana and other eudicot model systems. In contrast, detailed knowledge on the ethylene pathway and response to the hormone is markedly limited in maize (Zea mays L.), a global cereal crop that is a major source of calories for humans and livestock, as well as a key industrial biofeedstock. Recent reports of forward screens and targeted reverse genetics have provided important insight into conserved and unique differences of the ethylene pathway and downstream responses. Natural and edited allelic variation in the promoter regions and coding sequences of ethylene biosynthesis and signaling genes alters maize shoot and root architectures, and plays a crucial role in biomass and grain yields. This review discusses recent advances in ethylene research in maize, with an emphasis on the role of ethylene in regulating growth and development of the shoot and root systems, and ultimately how this crucial hormone impacts plant architecture and grain yield. 
    more » « less
  2. Improving root traits to improve efficiency of nutrient uptake in plants is an opportunity to increase crop production in response to climate change induced edaphic stresses. Maize (Zea mays L.) studies showed a large variation of root architecture traits in response to such stresses. Quantifying this response uses highthroughput, image-based phenotyping to characterize root architecture variation across edaphic stresses. Our objective is to test if commonly used root traits discriminate stress environments and if a single mathematical description of the complete root architecture reveals a phenotypic spectrum of root architectures in the B73 maize line using manual, DIRT/2D (Digital Imaging of Root Traits) and DIRT/3D measurements. Maize B73 inbred lines were grown in three field conditions: nonlimiting conditions, high nitrogen (N), and low N. A proprietary 3D scanner captured 2D and 3D images of harvested maize roots to compute root descriptors that distinguish shapes of root architecture. The results showed that the normalized mean value of computational root traits from DIRT/2D and DIRT/3D indicated significant discrimination among B73 across environments. We found a strong correlation (R2> 0.8) between the traits measured in 3D point clouds and manually measured traits. Ear weight and shoot biomass in low N significantly decreased by 45% and 21%, respectively. Low N reduced the maximum root system diameter by 13%, root system diameter by 10%, and root system length by 9%. The 2D and 3D whole root descriptors distinguished three different root architectural shapes of B73 in the same field. Our study assists plant breeders to improve crop productivity and stress tolerance in maize. 
    more » « less
  3. Soil salinity is one of the major threats to agricultural productivity worldwide. Salt stress exposure alters root and shoots growth rates, thereby affecting overall plant performance. While past studies have extensively documented the effect of salt stress on root elongation and shoot development separately, here we take an innovative approach by examining the coordination of root and shoot growth under salt stress conditions. Utilizing a newly developed tool for quantifying the root:shoot ratio in agar-grownArabidopsisseedlings, we found that salt stress results in a loss of coordination between root and shoot growth rates. We identify a specific gene cluster encoding domain-of-unknown-function 247 (DUF247), and characterize one of these genes asSaltRoot:shootRatioRegulatorGene (SR3G). Further analysis elucidates the role of SR3G as a negative regulator of salt stress tolerance, revealing its function in regulating shoot growth, root suberization, and sodium accumulation. We further characterize thatSR3Gexpression is modulated byWRKY75transcription factor, known as a positive regulator of salt stress tolerance. Finally, we show that the salt stress sensitivity ofwrky75mutant is completely diminished when it is combined withsr3gmutation. Together, our results demonstrate that utilizing root:shoot ratio as an architectural feature leads to the discovery of a new stress resilience gene. The study’s innovative approach and findings not only contribute to our understanding of plant stress tolerance mechanisms but also open new avenues for genetic and agronomic strategies to enhance crop environmental resilience. 
    more » « less
  4. Land plants develop highly diversified shoot architectures, all of which are derived from the pluripotent stem cells in shoot apical meristems (SAMs). As sustainable resources for continuous organ formation in the aboveground tissues, SAMs play an important role in determining plant yield and biomass production. In this review, we summarize recent advances in understanding one group of key regulators – the HAIRY MERISTEM (HAM) family GRAS domain proteins – in shoot meristems. We highlight the functions of HAM family members in dictating shoot stem cell initiation and proliferation, the signaling cascade that shapes HAM expression domains in shoot meristems, and the conservation and diversification of HAM family members in land plants. We also discuss future directions that potentially lead to a more comprehensive view of the HAM gene family and stem cell homeostasis in land plants. 
    more » « less
  5. Abstract Isoprene, a volatile hydrocarbon, is typically emitted from the leaves of many plant species. Given its well‐known function in plant growth and defense aboveground, we examined its effects on root physiology. We used isoprene‐emitting (IE) lines and a non‐emitting (NE) line of Arabidopsis and investigated their performance by analyzing root phenotype, hormone levels, transcriptome, and metabolite profiles under both normal and salt stress conditions. We show that IE lines emitted tiny amounts of isoprene from roots and showed an increased root/shoot ratio compared with NE line. Isoprene emission exerted a noteworthy influence on hormone profiles related to plant growth and stress response, promoting root development and salt‐stress resistance. Methyl erythritol 4‐phosphate pathway metabolites, precursors of isoprene and hormones, were higher in the roots of IE lines than in the NE line. Transcriptome data indicated that the presence of isoprene increased the expression of key genes involved in hormone metabolism/signaling. Our findings reveal that constitutive root isoprene emission sustains root growth under saline conditions by regulating and/or priming hormone biosynthesis and signaling mechanisms and expression of key genes relevant to salt stress defense. 
    more » « less