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1. Canopy effects of octocoral communities on sedimentation: modern baffles on the shallow-water reefs of St. John, USVI

   https://doi.org/10.1007/s00338-021-02053-6  

   Cerpovicz, A. F.; Lasker, H. R. (January 2021, Coral Reefs)

   null (Ed.)

   Recent shifts in the presence and abundance of species on shallow Caribbean coral reefs have left octocorals as the dominant functional group on some reefs, creating an “animal forest” with an associated canopy. This transition changes the reef profile potentially affecting flow and sedimentation. We examined the effects of an octocoral forest on the depositional environment on a shallow-water fringing reef system on the south shore of St John, USVI. The depositional environment was characterized as canopy or non-canopy based on octocoral density. The effect of the octocoral canopy on flow and sedimentation was assessed using clod cards and sediment traps at 15 paired locations. The octocoral canopy altered flow resulting in greater levels of turbulence within the canopy. Sediment traps in areas of dense octocoral canopy accumulated greater amounts of sediment, with coarser, more rounded grains. Organic content of sediments collected in the traps was greater within the canopy than outside of it. The increase in turbulence within the canopy was likely due to wave driven oscillatory flow interacting with the octocoral colonies. Sediment traps in the canopy likely had greater sediment accumulation due to both resuspension of sediments from within the canopy and deposition of imported sediments as flow decreased within the canopy. The presence of octocoral canopies and the reworking of sediment within them may affect the success of settling larvae and the evolution of reef structure. 

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2. Bottom Stress and Drag on a Shallow Coral Reef

   https://doi.org/10.1029/2024JC021528  

   Boles, Elisabeth; Khrizman, Alexandra; Hamilton, Jenny; Mucciarone, David; Dunbar, Robert; Koseff, Jeffrey; Monismith, Stephen (November 2024, Journal of Geophysical Research: Oceans)

   Abstract Coral reef roughness produces turbulent boundary layers and bottom stresses that are important for reef metabolism monitoring and reef circulation modeling. However, there is some uncertainty as to whether field methods for estimating bottom stress are applicable in shallow canopy environments as found on coral reefs. Friction velocities () and drag coefficients () were estimated using five independent methods and compared across 14 sites on a shallow forereef (2–9 m deep) in Palau with large and spatially variable coral roughness elements (0.4–1 m tall). The methods included the following: (a) momentum balance closure, (b) log‐fitting to velocity profiles, (c) Reynolds stresses, (d) turbulence dissipation, and (e) roughness characterization from digital elevation models (DEMs). Both velocity profiles and point turbulence measurements indicated good agreement with log‐layer scaling, suggesting that measurements were taken within a well‐developed turbulent boundary layer and that canopy effects were minimal. However, estimated from the DEMs, momentum budget and log‐profile fitting were consistently larger than those estimated from direct turbulence measurements. Near‐bed Reynolds stresses only contributed about 1/3 of the total bottom stress and drag produced by the reef. Thus, effects of topographical heterogeneity that induce mean velocity fluxes, dispersive stresses, and form drag are expected to be important. This decoupling of total drag and local turbulence implies that both rates of mass transfer as well as values of fluxes inferred from concentration measurements may be proportional to smaller, turbulence‐derived values of rather than to those based on larger‐scale flow structure. 

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3. Social–environmental drivers inform strategic management of coral reefs in the Anthropocene

   https://doi.org/10.1038/s41559-019-0953-8  

   Darling, E. S. (October 2019, Nature ecology evolution)

   Without drastic efforts to reduce carbon emissions and mitigate globalized stressors, tropical coral reefs are in jeopardy. Strategic conservation and management requires identification of the environmental and socioeconomic factors driving the persistence of scleractinian coral assemblages—the foundation species of coral reef ecosystems. Here, we compiled coral abundance data from 2,584 Indo-Pacific reefs to evaluate the influence of 21 climate, social and environmental drivers on the ecology of reef coral assemblages. Higher abundances of framework-building corals were typically associated with: weaker thermal disturbances and longer intervals for potential recovery; slower human population growth; reduced access by human settlements and markets; and less nearby agriculture. We therefore propose a framework of three management strategies (protect, recover or transform) by considering: (1) if reefs were above or below a proposed threshold of >10% cover of the coral taxa important for structural complexity and carbonate production; and (2) reef exposure to severe thermal stress during the 2014–2017 global coral bleach- ing event. Our findings can guide urgent management efforts for coral reefs, by identifying key threats across multiple scales and strategic policy priorities that might sustain a network of functioning reefs in the Indo-Pacific to avoid ecosystem collapse. 

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4. Estimating Geometric Properties of Coral Reef Topography Using Obstacle‐ and Surface‐Based Approaches

   https://doi.org/10.1029/2019JC015870  

   Duvall, Melissa S.; Rosman, Johanna H.; Hench, James L. (June 2020, Journal of Geophysical Research: Oceans)

   Abstract In shallow water systems like coral reefs, bottom friction is an important term in the momentum balance. Parameterizations of bottom friction require a representation of canopy geometry, which can be conceptualized as an array of discrete obstacles or a continuous surface. Here, we assess the implications of using obstacle‐ and surface‐based representations to estimate geometric properties needed to parameterize drag. We collected high‐resolution reef topography data using a scanning multibeam sonar that resolved individual coral colonies within a set of 100‐m²reef patches primarily composed of moundingPoritescorals. The topography measurements yielded 1‐cm resolution continuous surfaces consisting of a single elevation value for each position in a regular horizontal grid. These surfaces were analyzed by (1) defining discrete obstacles and quantifying their properties (dimensions, shapes), and (2) computing properties of the elevation field (root mean square (rms) elevations, rms slopes, spectra). We then computed the roughness density (i.e., frontal area per unit plan area) using both analysis approaches. The obstacle and surface‐based estimates of roughness density did not agree, largely because small‐scale topographic variations contributed significantly to total frontal area. These results challenge the common conceptualization of shallow‐water canopies as obstacle arrays, which may not capture significant contributions of high‐wavenumber roughness to total frontal area. In contrast, the full range of roughness length scales present in natural reefs is captured by the continuous surface representation. Parameterizations of bottom friction over reef topography could potentially be improved by representing the contributions of all length scales to total frontal area and drag. 

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5. Coral bleaching response is unaltered following acclimatization to reefs with distinct environmental conditions

   https://doi.org/10.1073/pnas.2025435118  

   Barott, Katie L.; Huffmyer, Ariana S.; Davidson, Jennifer M.; Lenz, Elizabeth A.; Matsuda, Shayle B.; Hancock, Joshua R.; Innis, Teegan; Drury, Crawford; Putnam, Hollie M.; Gates, Ruth D. (May 2021, Proceedings of the National Academy of Sciences)

   null (Ed.)

   Urgent action is needed to prevent the demise of coral reefs as the climate crisis leads to an increasingly warmer and more acidic ocean. Propagating climate change–resistant corals to restore degraded reefs is one promising strategy; however, empirical evidence is needed to determine whether stress resistance is affected by transplantation beyond a coral’s native reef. Here, we assessed the performance of bleaching-resistant individuals of two coral species following reciprocal transplantation between reefs with distinct pH, salinity, dissolved oxygen, sedimentation, and flow dynamics to determine whether heat stress response is altered following coral exposure to novel physicochemical conditions in situ. Critically, transplantation had no influence on coral heat stress responses, indicating that this trait was relatively fixed. In contrast, growth was highly plastic, and native performance was not predictive of performance in the novel environment. Coral metabolic rates and overall fitness were higher at the reef with higher flow, salinity, sedimentation, and diel fluctuations of pH and dissolved oxygen, and did not differ between native and cross-transplanted corals, indicating acclimatization via plasticity within just 3 mo. Conversely, cross-transplants at the second reef had higher fitness than native corals, thus increasing the fitness potential of the recipient population. This experiment was conducted during a nonbleaching year, so the potential benefits to recipient population fitness are likely enhanced during bleaching years. In summary, this study demonstrates that outplanting bleaching-resistant corals is a promising tool for elevating the resistance of coral populations to ocean warming. 

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