skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


Title: Breeding transients in capture–recapture modeling and their consequences for local population dynamics
Abstract Standard procedures for capture–mark–recapture modelling (CMR) for the study of animal demography include running goodness-of-fit tests on a general starting model. A frequent reason for poor model fit is heterogeneity in local survival among individuals captured for the first time and those already captured or seen on previous occasions. This deviation is technically termed a transience effect. In specific cases, simple, uni-state CMR modeling showing transients may allow researchers to assess the role of these transients on population dynamics. Transient individuals nearly always have a lower local survival probability, which may appear for a number of reasons. In most cases, transients arise due to permanent dispersal, higher mortality, or a combination of both. In the case of higher mortality, transients may be symptomatic of a cost of first reproduction. A few studies working at large spatial scales actually show that transients more often correspond to survival costs of first reproduction rather than to permanent dispersal, bolstering the interpretation of transience as a measure of costs of reproduction, since initial detections are often associated with first breeding attempts. Regardless of their cause, the loss of transients from a local population should lower population growth rate. We review almost 1000 papers using CMR modeling and find that almost 40% of studies fitting the searching criteria (N = 115) detected transients. Nevertheless, few researchers have considered the ecological or evolutionary meaning of the transient phenomenon. Only three studies from the reviewed papers considered transients to be a cost of first reproduction. We also analyze a long-term individual monitoring dataset (1988–2012) on a long-lived bird to quantify transients, and we use a life table response experiment (LTRE) to measure the consequences of transients at a population level. As expected, population growth rate decreased when the environment became harsher while the proportion of transients increased. LTRE analysis showed that population growth can be substantially affected by changes in traits that are variable under environmental stochasticity and deterministic perturbations, such as recruitment, fecundity of experienced individuals, and transient probabilities. This occurred even though sensitivities and elasticities of these parameters were much lower than those for adult survival. The proportion of transients also increased with the strength of density-dependence. These results have implications for ecological and evolutionary studies and may stimulate other researchers to explore the ecological processes behind the occurrence of transients in capture–recapture studies. In population models, the inclusion of a specific state for transients may help to make more reliable predictions for endangered and harvested species.  more » « less
Award ID(s):
1753954
PAR ID:
10225242
Author(s) / Creator(s):
;
Date Published:
Journal Name:
Scientific Reports
Volume:
10
Issue:
1
ISSN:
2045-2322
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Abstract Dispersal evolves as an adaptive mechanism to optimize individual fitness across the landscape. Specifically, dispersal represents a mechanism to escape fitness costs resulting from changes in environmental conditions. Decades of empirical work suggest that individuals use local habitat cues to make movement decisions, but theory predicts that dispersal can also evolve as a fixed trait, independent of local conditions, in environments characterized by a history of stochastic spatiotemporal variation. Until now, however, both conditional and fixed models of dispersal evolution have primarily been evaluated using emigration data (stay vs. leave), and not dispersal distances: a more comprehensive measure of dispersal. Our goal was to test whether conditional or fixed models of dispersal evolution predict variation in dispersal distance in the stream salamanderGyrinophilus porphyriticus.We quantified variation in habitat conditions using measures of salamander performance from 4 yr of spatially explicit, capture–mark–recapture (CMR) data across three headwater streams in the Hubbard Brook Experimental Forest in central New Hampshire, USA. We used body condition as an index of local habitat quality that individuals may use to make dispersal decisions, and survival probability estimated from multistate CMR models as an index of mortality risk resulting from the long‐term history of environmental variation. We found that dispersal distances increased with declining survival probability, indicating that salamanders disperse further in risky environments. Dispersal distances were unrelated to spatial variation in body condition, suggesting that salamanders do not base dispersal distance decisions on local habitat quality. Our study provides the first empirical support for fixed models of dispersal evolution, which predict that dispersal evolves in response to a history of spatiotemporal environmental variation, rather than as a conditional response to current habitat conditions. More broadly, this study underscores the value of assessing alternative scales of environmental variation to gain a more complete and balanced understanding of dispersal evolution. 
    more » « less
  2. ABSTRACT An increasing body of evidence has displayed upslope shifts in the high-diversity avian communities of tropical mountains. Such shifts have largely been attributed to warming climates, although their actual mechanisms remain poorly understood. One likely possibility is that changes in species-specific demographic rates underlie elevational range shifts. Fine-scale population monitoring and capture–mark–recapture (CMR) analysis could shed light on these mechanisms, but, until recently, analytical constraints have limited our ability to model multiple demographic rates across bird communities while accounting for transient individuals. Here, we used Bayesian hierarchical multi-species CMR models to estimate the apparent survival, recruitment, and realized population growth rates of 17 bird species along an elevational gradient in the cloud forests of Honduras. For 6 species, we also modeled demographic rates across elevation and time. Although demographic rates varied among species, population growth rates tended to be higher in lower elevation species. Moreover, some species showed higher population growth rates at higher elevations, and elevational differences in growth rates were positively associated with previous estimates of upslope shifts at the study site. We also found that demographic rates showed contrasting trends across the duration of the study, with recruitment decreasing and apparent survival increasing, and stronger effects at lower elevations. Collectively, we provide the methodological tools to encourage more multi-species demographic analyses in other systems, while highlighting the potential for the demographic impacts of global change. We provide a Spanish translation in the Supplementary Materials. 
    more » « less
  3. ABSTRACT It has recently been recognised that populations are rarely in demographic equilibrium, but rather in a ‘transient’ state. To examine how transient dynamics influence our empirical understanding of the links between changes in demographic rates and population growth, we conducted a 32‐year study of Columbian ground squirrels. The population increased rapidly for 10 years, followed by a 2‐year crash, and a gradual 19‐year recovery. Transient life table response experiment (LTRE) analysis showed that demographic stochasticity accounted for approximately one‐fourth of the variation in population growth, leaving the majority to be explained by environmental influences. These relatively small rodents appeared to have a slow pace of life. But unlike the general pattern for large mammals with slow life histories, ground squirrel survival did not exhibit low variation associated with environmental ‘buffering’; instead, survival varied substantially over time and contributed substantially (78%) to changes in abundance over the long‐term study, with minor contributions from reproduction and unstable stage structure. 
    more » « less
  4. Using tags within a mark-recapture framework allows researchers to assess population size and connectivity. Such methods have been applied in coastal zone habitats to monitor salt marsh restoration success by comparing the movement patterns of Mummichogs (Fundulus heteroclitus) between restored and natural marshes. Visible Implant Elastomer (VIE) tags are commonly used to tag small fish like Mummichogs, though the retention and survival of small fish using this method varies between studies, producing uncertainty during mark-recapture-based approaches. To address this, we conducted a laboratory experiment to determine the rate of tag loss and mortality of VIE tags on Mummichogs of two size classes (greater or less than 61 mm) and across different taggers. Tag loss and mortality increased over time, and the latter significantly varied between taggers. We then developed a predictive model, R package ‘retmort’, to account for the effect of this increase on mark-recapture studies. When adapted to a series of published works, our model provided rational estimates of tagging error for multiple species and tagging methods. Of the case studies the model was applied to (n = 26), 15 resulted in a percent standard error greater than 5%, signaling a significant percent of error due to uncounted, tagged animals. By not accounting for these individuals, recapture studies, particularly those that assess restoration efforts and coastal resilience, could underestimate the effects of those projects, leading to superfluous restoration efforts and erroneous recapture data for species with low tag retention and high mortality rates. 
    more » « less
  5. 1. Identifying and accounting for unobserved individual heterogeneity in vital rates in demographic models is important for estimating population-level vital rates and identifying diverse life-history strategies, but much less is known about how this individual heterogeneity influences population dynamics. 2. We aimed to understand how the distribution of individual heterogeneity in reproductive and survival rates influenced population dynamics using vital rates from a Weddell seal population by altering the distribution of individual heterogeneity in reproduction, which also altered the distribution of individual survival rates through the incorporation of our estimate of the correlation between the two rates and assessing resulting changes in population growth. 3. We constructed an integral projection model (IPM) structured by age and reproductive state using estimates of vital rates for a long-lived mammal that has recently been shown to exhibit large individual heterogeneity in reproduction. Using output from the IPM, we evaluated how population dynamics changed with different underlying distributions of unobserved individual heterogeneity in reproduction. 4. Results indicate that the changes to the underlying distribution of individual heterogeneity in reproduction cause very small changes in the population growth rate and other population metrics. The largest difference in the estimated population growth rate resulting from changes to the underlying distribution of individual heterogeneity was less than 1%. 5. population level compared to the individual level. Although individual heterogeneity in reproduction may result in large differences in the lifetime fitness of individuals, changing the proportion of above- or below-average breeders in the population results in much smaller differences in annual population growth rate. For a long-lived mammal with stable and high adult-survival that gives birth to a single offspring, individual heterogeneity in reproduction has a limited effect on population dynamics. We posit that the limited effect of individual heterogeneity on population dynamics may be due to canalization of life-history traits. 
    more » « less