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1. Data report: revised composite depth scale and splice for IODP Expedition 363 Site U1483

   https://doi.org/10.14379/iodp.proc.363.201.2020  

   Gong, L. ; Lübbers, J. ; Beil, S. ; Holbourn, A. ( June 2020 , Proceedings of the International Ocean Discovery Program)

   null (Ed.)

   The shipboard sediment splice of International Ocean Discovery Program Expedition 363 Site U1483, drilled in 1733 m water depth on the Scott Plateau off Northwest Australia, was primarily based on a composite of the magnetic susceptibility records at 2.5 cm resolution from three holes drilled at this site. We performed X-ray fluorescence (XRF) core scanning at 2 cm intervals with overlaps of ~1–2 m at splice tie points and used these new data to verify the tie points along the original splice from 0 to 211.53 m core composite depth below seafloor (CCSF). Based on the XRF records, we revised the position of three original tie points and present a revised composite depth scale for Site U1483. These revisions resulted in shifts of up to 94 cm relative to the original shipboard offsets and a continuous section extending down to 211.62 m revised core composite depth below seafloor (r-CCSF). 

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2. Data report: revision of IODP Expedition 363 Site U1482 shipboard sediment splice based on X-ray fluorescence scanning elemental data

   https://doi.org/10.14379/iodp.proc.363.202.2020  

   Lübbers, J. ; Holbourn, A.E. ; Kuhnt, W. ; Beil, S. ( September 2020 , Proceedings of the International Ocean Discovery Program)

   null (Ed.)

   International Ocean Discovery Program (IODP) Expedition 363 recovered extended Neogene to Quaternary carbonate- and clay-rich sedimentary successions at Site U1482 (15°3.32ʹS, 120°26.10ʹE; 1466 m water depth), drilled at the southwestern edge of the Indo-Pacific Warm Pool off northwest Australia (Rosenthal et al., 2018b). Four holes were drilled with the advanced piston corer (APC) system at this site and deepened with the half-length APC (HLAPC) and extended core barrel (XCB) systems. A shipboard splice, from 0 to 451.26 m core composite depth below seafloor (CCSF), was established. After the expedition, the cores were scanned at high-resolution (1–2 cm) using an Avaatech X-ray fluorescence (XRF) core scanner. Scanning was performed along the shipboard splice with approximately 1 m overlap at the splice tie points for verification. Based on this new data set, we revised nine of the original splice tie points. The revised splice for Site U1482 now extends to 445.11 m revised CCSF and is available from the IODP Laboratory Information Management System (LIMS) database. 

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3. Data report: revised Pleistocene sediment splice for Site U1457, IODP Expedition 355

   https://doi.org/10.14379/iodp.proc.355.202.2019  

   Lyle, M. ; Saraswat, R. ( February 2019 , Proceedings of the International Ocean Discovery Program)

   null (Ed.)

   Sediment cores from adjacent holes at a drill site are typically spliced to make a continuous sediment record that spans sediment gaps that occur between sediment cores within each hole. The splice also provides a template for later sampling. During International Ocean Discovery Program Expedition 355, we made such a splice for both Sites U1456 and U1457 using shipboard Whole-Round Multisensor Logger and Section Half Multisensor Logger data. The shipboard-spliced sediment section at Site U1457 was constructed for the advanced piston corer interval to an age of about 1.5 Ma. Additional postexpedition planktonic foraminifer stable isotope data (Globigerinoides ruber δ18O) show that the shipboard stratigraphic tie between Cores 355-U1457B-1H and 355-U1457A-1H was wrong. This paper describes a revised splice that appends Core 355-U1457A-1H to the base of Core 355-U1457B-1H. The core composite depth below seafloor depths of the remaining splice have been revised because of this change. The revised splice interval is also longer by 1.2 m to accommodate the lower part of Core 355-U1457B-1H. In addition, a break of unknown thickness is present between Cores 355-U1457B-1H and 355-U1457A-1H. The revised splice interval table is included in this report. 

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4. Florida mangrove saltmarsh reference surface soils

   https://doi.org/10.6073/pasta/0e08cbe07c84488cb7b9dd16669946d0  

   Lewis, David Bruce ( January 2021 , Environmental Data Initiative)

   Site description. This data package consists of data obtained from sampling surface soil (the 0-7.6 cm depth profile) in black mangrove (Avicennia germinans) dominated forest and black needlerush (Juncus roemerianus) saltmarsh along the Gulf of Mexico coastline in peninsular west-central Florida, USA. This location has a subtropical climate with mean daily temperatures ranging from 15.4 °C in January to 27.8 °C in August, and annual precipitation of 1336 mm. Precipitation falls as rain primarily between June and September. Tides are semi-diurnal, with 0.57 m median amplitudes during the year preceding sampling (U.S. NOAA National Ocean Service, Clearwater Beach, Florida, station 8726724). Sea-level rise is 4.0 ± 0.6 mm per year (1973-2020 trend, mean ± 95 % confidence interval, NOAA NOS Clearwater Beach station). The A. germinans mangrove zone is either adjacent to water or fringed on the seaward side by a narrow band of red mangrove (Rhizophora mangle). A near-monoculture of J. roemerianus is often adjacent to and immediately landward of the A. germinans zone. The transition from the mangrove to the J. roemerianus zone is variable in our study area. An abrupt edge between closed-canopy mangrove and J. roemerianus monoculture may extend for up to several hundred meters in some locations, while other stretches of ecotone present a gradual transition where smaller, widely spaced trees are interspersed into the herbaceous marsh. Juncus roemerianus then extends landward to a high marsh patchwork of succulent halophytes (including Salicornia bigellovi, Sesuvium sp., and Batis maritima), scattered dwarf mangrove, and salt pans, followed in turn by upland vegetation that includes Pinus sp. and Serenoa repens. Field design and sample collection. We established three study sites spaced at approximately 5 km intervals along the western coastline of the central Florida peninsula. The sites consisted of the Salt Springs (28.3298°, -82.7274°), Energy Marine Center (28.2903°, -82.7278°), and Green Key (28.2530°, -82.7496°) sites on the Gulf of Mexico coastline in Pasco County, Florida, USA. At each site, we established three plot pairs, each consisting of one saltmarsh plot and one mangrove plot. Plots were 50 m^2 in size. Plots pairs within a site were separated by 230-1070 m, and the mangrove and saltmarsh plots composing a pair were 70-170 m apart. All plot pairs consisted of directly adjacent patches of mangrove forest and J. roemerianus saltmarsh, with the mangrove forests exhibiting a closed canopy and a tree architecture (height 4-6 m, crown width 1.5-3 m). Mangrove plots were located at approximately the midpoint between the seaward edge (water-mangrove interface) and landward edge (mangrove-marsh interface) of the mangrove zone. Saltmarsh plots were located 20-25 m away from any mangrove trees and into the J. roemerianus zone (i.e., landward from the mangrove-marsh interface). Plot pairs were coarsely similar in geomorphic setting, as all were located on the Gulf of Mexico coastline, rather than within major sheltering formations like Tampa Bay, and all plot pairs fit the tide-dominated domain of the Woodroffe classification (Woodroffe, 2002, "Coasts: Form, Process and Evolution", Cambridge University Press), given their conspicuous semi-diurnal tides. There was nevertheless some geomorphic variation, as some plot pairs were directly open to the Gulf of Mexico while others sat behind keys and spits or along small tidal creeks. Our use of a plot-pair approach is intended to control for this geomorphic variation. Plot center elevations (cm above mean sea level, NAVD 88) were estimated by overlaying the plot locations determined with a global positioning system (Garmin GPS 60, Olathe, KS, USA) on a LiDAR-derived bare-earth digital elevation model (Dewberry, Inc., 2019). The digital elevation model had a vertical accuracy of ± 10 cm (95 % CI) and a horizontal accuracy of ± 116 cm (95 % CI). Soil samples were collected via coring at low tide in June 2011. From each plot, we collected a composite soil sample consisting of three discrete 5.1 cm diameter soil cores taken at equidistant points to 7.6 cm depth. Cores were taken by tapping a sleeve into the soil until its top was flush with the soil surface, sliding a hand under the core, and lifting it up. Cores were then capped and transferred on ice to our laboratory at the University of South Florida (Tampa, Florida, USA), where they were combined in plastic zipper bags, and homogenized by hand into plot-level composite samples on the day they were collected. A damp soil subsample was immediately taken from each composite sample to initiate 1 y incubations for determination of active C and N (see below). The remainder of each composite sample was then placed in a drying oven (60 °C) for 1 week with frequent mixing of the soil to prevent aggregation and liberate water. Organic wetland soils are sometimes dried at 70 °C, however high drying temperatures can volatilize non-water liquids and oxidize and decompose organic matter, so 50 °C is also a common drying temperature for organic soils (Gardner 1986, "Methods of Soil Analysis: Part 1", Soil Science Society of America); we accordingly chose 60 °C as a compromise between sufficient water removal and avoidance of non-water mass loss. Bulk density was determined as soil dry mass per core volume (adding back the dry mass equivalent of the damp subsample removed prior to drying). Dried subsamples were obtained for determination of soil organic matter (SOM), mineral texture composition, and extractable and total carbon (C) and nitrogen (N) within the following week. Sample analyses. A dried subsample was apportioned from each composite sample to determine SOM as mass loss on ignition at 550 °C for 4 h. After organic matter was removed from soil via ignition, mineral particle size composition was determined using a combination of wet sieving and density separation in 49 mM (3 %) sodium hexametaphosphate ((NaPO_3)_6) following procedures in Kettler et al. (2001, Soil Science Society of America Journal 65, 849-852). The percentage of dry soil mass composed of silt and clay particles (hereafter, fines) was calculated as the mass lost from dispersed mineral soil after sieving (0.053 mm mesh sieve). Fines could have been slightly underestimated if any clay particles were burned off during the preceding ignition of soil. An additional subsample was taken from each composite sample to determine extractable N and organic C concentrations via 0.5 M potassium sulfate (K_2SO_4) extractions. We combined soil and extractant (ratio of 1 g dry soil:5 mL extractant) in plastic bottles, reciprocally shook the slurry for 1 h at 120 rpm, and then gravity filtered it through Fisher G6 (1.6 μm pore size) glass fiber filters, followed by colorimetric detection of nitrite (NO_2^-) + nitrate (NO_3^-) and ammonium (NH_4^+) in the filtrate (Hood Nowotny et al., 2010,Soil Science Society of America Journal 74, 1018-1027) using a microplate spectrophotometer (Biotek Epoch, Winooski, VT, USA). Filtrate was also analyzed for dissolved organic C (referred to hereafter as extractable organic C) and total dissolved N via combustion and oxidation followed by detection of the evolved CO_2 and N oxide gases on a Formacs HT TOC/TN analyzer (Skalar, Breda, The Netherlands). Extractable organic N was then computed as total dissolved N in filtrate minus extractable mineral N (itself the sum of extractable NH_4-N and NO_2-N + NO_3-N). We determined soil total C and N from dried, milled subsamples subjected to elemental analysis (ECS 4010, Costech, Inc., Valencia, CA, USA) at the University of South Florida Stable Isotope Laboratory. Median concentration of inorganic C in unvegetated surface soil at our sites is 0.5 % of soil mass (Anderson, 2019, Univ. of South Florida M.S. thesis via methods in Wang et al., 2011, Environmental Monitoring and Assessment 174, 241-257). Inorganic C concentrations are likely even lower in our samples from under vegetation, where organic matter would dilute the contribution of inorganic C to soil mass. Nevertheless, the presence of a small inorganic C pool in our soils may be counted in the total C values we report. Extractable organic C is necessarily of organic C origin given the method (sparging with HCl) used in detection. Active C and N represent the fractions of organic C and N that are mineralizable by soil microorganisms under aerobic conditions in long-term soil incubations. To quantify active C and N, 60 g of field-moist soil were apportioned from each composite sample, placed in a filtration apparatus, and incubated in the dark at 25 °C and field capacity moisture for 365 d (as in Lewis et al., 2014, Ecosphere 5, art59). Moisture levels were maintained by frequently weighing incubated soil and wetting them up to target mass. Daily CO_2 flux was quantified on 29 occasions at 0.5-3 week intervals during the incubation period (with shorter intervals earlier in the incubation), and these per day flux rates were integrated over the 365 d period to compute an estimate of active C. Observations of per day flux were made by sealing samples overnight in airtight chambers fitted with septa and quantifying headspace CO_2 accumulation by injecting headspace samples (obtained through the septa via needle and syringe) into an infrared gas analyzer (PP Systems EGM 4, Amesbury, MA, USA). To estimate active N, each incubated sample was leached with a C and N free, 35 psu solution containing micronutrients (Nadelhoffer, 1990, Soil Science Society of America Journal 54, 411-415) on 19 occasions at increasing 1-6 week intervals during the 365 d incubation, and then extracted in 0.5 M K_2SO_4 at the end of the incubation in order to remove any residual mineral N. Active N was then quantified as the total mass of mineral N leached and extracted. Mineral N in leached and extracted solutions was detected as NH_4-N and NO_2-N + NO_3-N via colorimetry as above. This incubation technique precludes new C and N inputs and persistently leaches mineral N, forcing microorganisms to meet demand by mineralizing existing pools, and thereby directly assays the potential activity of soil organic C and N pools present at the time of soil sampling. Because this analysis commences with disrupting soil physical structure, it is biased toward higher estimates of active fractions. Calculations. Non-mobile C and N fractions were computed as total C and N concentrations minus the extractable and active fractions of each element. This data package reports surface-soil constituents (moisture, fines, SOM, and C and N pools and fractions) in both gravimetric units (mass constituent / mass soil) and areal units (mass constituent / soil surface area integrated through 7.6 cm soil depth, the depth of sampling). Areal concentrations were computed as X × D × 7.6, where X is the gravimetric concentration of a soil constituent, D is soil bulk density (g dry soil / cm^3), and 7.6 is the sampling depth in cm. 

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5. Data report: calibration of XRF scanning CaCO3 estimates for the upper 30 m along the Site U1543 splice, International Ocean Discovery Program Expedition 383

   Kasuya, T. ; Iwasaki, S. ; Okazaki, Y. ( June 2023 , Proceedings of the International Ocean Discovery Program Expedition reports)

   To estimate the calcium carbonate (CaCO3) content in the Site U1543 sediment core samples retrieved during International Ocean Discovery Program (IODP) Expedition 383 at high downcore resolution, the X-ray fluorescence (XRF) scanning Ca data, at a spacing of every 10 mm downcore, were calibrated using a total of 118 coulometry-based discrete CaCO3 analyses from the upper 30 meters composite depth (mcd) along the splice. To remove the volume measurement problems of XRF and estimating CaCO3 contents quantitatively, first, raw XRF peak areas were scaled to reduce the effect resulting from the differences in efficiency at absorbing X-rays. Then, the scaled XRF scanning data were normalized to adjust the variability of the amount of XRF peak areas due to porosity and calibrated to properly estimate CaCO3 content. Based on the quality assessment, the calibrated XRF CaCO3 estimates are within ±4.50 wt% of the discrete measurements (1 standard deviation). This data report presents a discrete CaCO3 measurement data set, a normalized median-scaled XRF data set, and XRF CaCO3 estimates on the core depth below seafloor, Method A (CSF-A), and core composite depth below seafloor, Method A (CCSF-A), depth scales. 

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