More Like this

1. On the relationship between environmental suitability and habitat use for three neotropical mammals

   https://doi.org/10.1093/jmammal/gyab152  

   Contreras-Díaz, Rusby G. ; Falconi, Manuel ; Osorio-Olvera, Luis ; Cobos, Marlon E. ; Soberón, Jorge ; Townsend Peterson, A. ; Lira-Noriega, Andrés ; Álvarez-Loayza, Patricia ; Luis Gonçalves, André ; Hurtado-Astaiza, Johanna ; et al ( January 2022 , Journal of Mammalogy)

   Recent studies have used occupancy models (OM) and ecological niche models (ENM) to provide a better understanding of species’ distributions at different scales. One of the main ideas underlying the theoretical foundations of both OM and ENM is that they are positively related to abundance: higher occupancy implies higher density and more suitable areas are likely to have more abundant populations. Here, we analyze the relationship between habitat use measured in terms of occupancy probabilities from OM and environmental suitability derived from ENM in three different Neotropical mammal species: Leopardus wiedii, Cuniculus paca, and Dasypus novemcinctus. For ENM, we used climatic and vegetation cover variables and implemented a model calibration and selection protocol to select the most competitive models. For OM, we used a single-species, single-season model with site covariates for camera-trap data from six different sites throughout the Neotropical realm. Covariates included vegetation percentage, normalized difference vegetation index, normalized difference water index, and elevation. For each site, we fit OM using all possible combinations of variables and selected the most competitive (ΔAICc < 2) to build an average OM. We explored relationships between estimated suitability and occupancy values using Spearman correlation analysis. Relationships between ENM and OM tendedmore »to be positive for the three Neotropical mammals, but the strength varied among sites, which could be explained by local factors such as site characteristics and conservation status of areas. We conjecture that ENM are suitable to understand spatial patterns at coarser geographic scales because the concept of the niche is about the species as a whole, whereas OM are more relevant to explain the distribution locally, likely reflecting transient dynamics of populations resulting from many local factors such as community composition and biotic processes.

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2. Can artificial retreat sites help frogs recover after severe habitat devastation? Insights on the use of “coqui houses” after Hurricane Maria in Puerto Rico

   Burrowes, Patricia A ; Hernandez-Figueroa, Abner D ; Acevedo, Gustavo D ; Aleman-Rios, Junangel ; Longo, Ana V. ( June 2021 , Amphibian reptile conservation)

   Hassapakis, Craig ; Grieneisen, M. (Ed.)

   On September 2017, Hurricane Maria swept over Puerto Rico as a Category 4 storm. Severe canopy loss, augmentation of forest floor debris, and a significant increase in temperature and light reaching the understory were among the most evident changes at El Yunque National Forest, where a population of Eleutherodactylus coqui frogs has been monitored over the past 30 years. When sampling was re-established, the frogs could be heard calling, but it was very difficult to find them among the complexity of vegetation in the forest floor. We inferred that canopy disturbance had left frogs without optimal arboreal habitats for retreat, nocturnal perching, feeding, and reproductive activities, and wondered whether they would use artificial habitats placed in the forest understory. To test this, two types of artificial habitats (i.e., “coqui houses”) were introduced in the forest understory, consisting of either open PVC pipes or single-entrance natural bamboo shoots. Surveys were conducted twice a month for 15 months in an experimental transect with coqui houses, and a control transect without them. Data were collected on the occupancy rate of the artificial sites, type of usage, time of day occupied, and the number of E. coqui observed. The effects of time since themore »hurricane, microhabitat temperature, type of coqui house, and seasonality on the occupancy rate were also evaluated. Results showed that coquis used bamboo houses mostly during daytime as retreat and nesting sites, whereas the PVC houses were used mostly at night as calling sites. Daytime occupancy of coqui houses showed a significant bell-shaped pattern over time since the hurricane. This may be explained by a steady increase in usage after severe forest damage, a peak during the stressful cool-dry season, and a decline afterwards as the forest began to recover. No differences were found in frog counts between experimental and control transects, probably because the coquis could also hide among the fallen vegetation, but either disparities in forest conditions or inappropriateness of the methods for estimating population numbers may have overshadowed this effect. Coquis used artificial houses more often during the most stressful environmental conditions, suggesting that these shelters may serve to enhance habitat quality for amphibians after extreme weather events.« less
3. Tracking the assembly of nested parasite communities: using β-diversity to understand variation in parasite richness and composition over time and scale

   Moss*, W. E. ( January 2020 , Journal of animal ecology)

   Community composition is driven by a few key assembly processes: ecological selection, drift and dispersal. Nested parasite communities represent a powerful study system for understanding the relative importance of these processes and their relationship with biological scale. Quantifying β‐diversity across scales and over time additionally offers mechanistic insights into the ecological processes shaping the distributions of parasites and therefore infectious disease. To examine factors driving parasite community composition, we quantified the parasite communities of 959 amphibian hosts representing two species (the Pacific chorus frog, Pseudacris regilla and the California newt, Taricha torosa) sampled over 3 months from 10 ponds in California. Using additive partitioning, we estimated how much of regional parasite richness (γ‐diversity) was composed of within‐host parasite richness (α‐diversity) and turnover (β‐diversity) at three biological scales: across host individuals, across species and across habitat patches (ponds). We also examined how β‐diversity varied across time at each biological scale. Differences among ponds comprised the majority (40%) of regional parasite diversity, followed by differences among host species (23%) and among host individuals (12%). Host species supported parasite communities that were less similar than expected by null models, consistent with ecological selection, although these differences lessened through time, likely due to highmore »dispersal rates of infectious stages. Host individuals within the same population supported more similar parasite communities than expected, suggesting that host heterogeneity did not strongly impact parasite community composition and that dispersal was high at the individual host-level. Despite the small population sizes of within‐host parasite communities, drift appeared to play a minimal role in structuring community composition. Dispersal and ecological selection appear to jointly drive parasite community assembly, particularly at larger biological scales. The dispersal ability of aquatic parasites with complex life cycles differs strongly across scales, meaning that parasite communities may predictably converge at small scales where dispersal is high, but may be more stochastic and unpredictable at larger scales. Insights into assembly mechanisms within multi‐host, multi‐parasite systems provide opportunities for understanding how to mitigate the spread of infectious diseases within human and wildlife hosts.« less
4. Meta-analysis shows that overabundant deer (Cervidae) populations consistently decrease average population abundance and species richness of forest birds

   https://doi.org/10.1093/ornithapp/duab040  

   Crystal-Ornelas, Robert ; Brown, Jeffrey A ; Valentin, Rafael E ; Beardsley, Caroline ; Lockwood, Julie L ( September 2021 , Ornithological Applications)

   Abstract Local-scale studies have shown that an overabundance of Cervidae species (deer, elk, moose) impacts forest bird communities. Through meta-analysis, we provide a generalized estimate of the overall direction and magnitude of the indirect effects overabundant cervids have on avian species. We conducted 2 distinct meta-analyses that synthesized data on 130 bird species collected from 17 publications. These analyses compared bird species’ population abundance and/or species richness at sites with overabundant cervids to sites with lower cervid abundance or without cervids. We evaluated whether the impacts of overabundant cervids are generally in the same direction (positive, negative) across avian species and locations and if effects vary in magnitude according to avian nesting location and foraging habitat. We found that where cervids were overabundant, there was a significant decrease in mean bird population abundance and species richness. Species that nest in trees, shrubs, and on the ground showed the largest decreases in abundance, as did species whose primary habitat is forest and open woodland and species that are primarily insectivores or omnivores. We did not find significant decreases in abundance for avian species that nest in cavities, whose primary habitat is grassland or scrub, nor for species that mainly eat seeds.more »Our results indicate that overabundant cervids, likely through their direct effects on vegetation and indirect effects on insects and forest birds, negatively impact individual bird populations and decrease overall avian species richness.« less
5. Habitat Use and Activity Patterns of a Terrestrial Turtle (Rhinoclemmys rubida perixantha) in a Seasonally Dry Tropical Forest

   Butterfield, Taggert G. ; Scoville, Alison S. ; Garcia, Andres ; Beck, Daniel D. ( July 2018 , Herpetologica)

   We report the results of a field study on Mexican Spotted Wood Turtles (Rhinoclemmys rubida perixantha) in a seasonally dry tropical forest of coastal Jalisco, Mexico. We used field surveys, trail spools, and radio telemetry to investigate activity patterns, estimate home range size with three different techniques, and develop a generalized linear model to identify features associated with habitats used by R. r. perixantha. We found that turtles were most frequently active at midday, with peak activity occurring from 0900 to 1500 h. During the dry season (January–mid-June), R. r. perixantha showed reduced activity (fewer movements and shorter travel distances) compared to the wet season (late June–September). Home range size did not differ among the three methods we compared, and all estimates revealed that R. r. perixantha have small home ranges, with males having larger home ranges than females. Sites used by turtles were positively associated with leaf litter and woody debris, herbaceous plants, vegetation, vine-like shrubs, and sloped terrain, and negatively associated with bare ground. Our findings can be used to strengthen future conservation efforts for R. r. perixantha, as well as other terrestrial geoemydids.