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1. Effects of Intra‐Base Pair Proton Transfer on Dissociation and Singlet Oxygenation of 9‐Methyl‐8‐Oxoguanine−1‐Methyl‐Cytosine Base‐Pair Radical Cations

   https://doi.org/10.1002/cphc.202300511  

   Moe, May_Myat; Tsai, Midas; Liu, Jianbo (October 2023, ChemPhysChem)

   Abstract 8‐Oxoguanosine is the most common oxidatively generated base damage and pairs with complementary cytidine within duplex DNA. The 8‐oxoguanosine−cytidine lesion, if not recognized and removed, not only leads to G‐to‐T transversion mutations but renders the base pair being more vulnerable to the ionizing radiation and singlet oxygen (¹O₂) damage. Herein, reaction dynamics of a prototype Watson−Crick base pair [9MOG ⋅ 1MC]⋅⁺, consisting of 9‐methyl‐8‐oxoguanine radical cation (9MOG⋅⁺) and 1‐methylcystosine (1MC), was examined using mass spectrometry coupled with electrospray ionization. We first detected base‐pair dissociation in collisions with the Xe gas, which provided insight into intra‐base pair proton transfer of 9MOG⋅⁺ ⋅ 1MC[9MOG − H_N1]⋅ ⋅ [1MC+H_N3′]⁺and subsequent non‐statistical base‐pair separation. We then measured the reaction of [9MOG ⋅ 1MC]⋅⁺with¹O₂, revealing the two most probable pathways, C5‐O₂addition and H_N7‐abstraction at 9MOG. Reactions were entangled with the two forms of 9MOG radicals and base‐pair structures as well as multi‐configurations between open‐shell radicals and¹O₂(that has a mixed singlet/triplet character). These were disentangled by utilizing approximately spin‐projected density functional theory, coupled‐cluster theory and multi‐referential electronic structure modeling. The work delineated base‐pair structural context effects and determined relative reactivity toward¹O₂as [9MOG − H]⋅>9MOG⋅⁺>[9MOG − H_N1]⋅ ⋅ [1MC+H_N3′]⁺≥9MOG⋅⁺ ⋅ 1MC. 

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2. Iron Fenton oxidation of 2′-deoxyguanosine in physiological bicarbonate buffer yields products consistent with the reactive oxygen species carbonate radical anion not the hydroxyl radical

   https://doi.org/10.1039/D0CC04138F  

   Fleming, Aaron M.; Burrows, Cynthia J. (August 2020, Chemical Communications)

   null (Ed.)

   Product analysis from the iron Fenton oxidation of 2′-deoxyguanosine found reactions in bicarbonate buffer yield 8-oxo-2′-deoxyguanosine and spiroiminodihyantoin consistent with CO 3 ˙ − . Reactions in phosphate buffer furnished high yields of sugar oxidation products consistent with HO˙. These observations change the view of DNA oxidation products from the iron-Fenton reaction. 

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3. Reaction Pathway for the Aerobic Oxidation of Phosphines Catalyzed by Oxomolybdenum Salen Complexes

   https://doi.org/10.1002/ejic.202300506  

   Rusmore, Theo_A; Lander, Chance; Nicholas, Kenneth_M (December 2023, European Journal of Inorganic Chemistry)

   Abstract Catalysis ofO‐atom transfer (OAT) reactions is a characteristic of both natural (enzymatic) and synthetic molybdenum‐oxo and ‐peroxo complexes. These reactions can employ a variety of terminal oxidants, e. g. DMSO,N‐oxides, and peroxides, etc., but rarely molecular oxygen. Here we demonstrate the ability of a set of Schiff‐base‐MoO₂complexes (cy‐salen)MoO₂(cy‐salen=N,N’‐cyclohexyl‐1,2‐bis‐salicylimine) to catalyze the aerobic oxidation of PPh₃. We also report the results of a DFT computational investigation of the catalytic pathway, including the identification of energetically accessible intermediates and transition states, for the aerobic oxidation of PMe₃. Starting from the dioxo species, (cy‐salen)Mo(VI)O₂(1), key reaction steps include: 1) associative addition of PMe₃to an oxo‐O to give LMo(IV)(O)(OPMe₃) (2); 2) OPMe₃dissociation from2to produce mono‐oxo complex (cy‐salen)Mo(IV)O (3); 3) stepwise O₂association with3via superoxo species (cy‐salen)Mo(V)(O)(η¹‐O₂) (4) to form the oxo‐peroxo intermediate (cy‐salen)Mo(VI)(O)(η²‐O₂) (5); 4) theO‐transfer reaction of PMe₃with oxo‐peroxo species5at the oxo‐group, rather than the peroxo unit leading, after OPMe₃dissociation, to a monoperoxo species, (cy‐salen)Mo(IV)(η²‐O₂) (7); and 5) regeneration of the dioxo complex (cy‐salen)Mo(VI)O₂(1) from the monoperoxo triplet³7or singlet¹7by a concerted, asynchronous electronic isomerization. An alternative pathway for recycling of the oxo‐peroxo species5to the dioxo‐Mo1via a bimetallic peroxo complex LMo(O)‐O−O‐Mo(O)L8is determined to be energetically viable, but is unlikely to be competitive with the primary pathway for aerobic phosphine oxidation catalyzed by1. 

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4. Organo‐Functionalized Lacunary Double Cubane‐Type Oxometallates: Synthesis, Structure, and Properties of [(M ^II Cl) ₂ (V ^IV O) ₂ {((HOCH ₂ CH ₂ )(H)N(CH ₂ CH ₂ O))(HN(CH ₂ CH ₂ O) ₂ )} ₂ ] (M=Co, Zn)

   https://doi.org/10.1002/chem.202301389  

   Shuaib, Damola T.; Swenson, LaSalle; Kaduk, James A.; Chang, Tieyan; Chen, Yu‐Sheng; McNeely, James; Khan, M. Ishaque (October 2023, Chemistry – A European Journal)

   Abstract Organofunctionalized tetranuclear clusters [(M^IICl)₂(V^IVO)₂{((HOCH₂CH₂)(H)N(CH₂CH₂O))(HN(CH₂CH₂O)₂)}₂] (1, M=Co,2: M=Zn) containing an unprecedented oxometallacyclic {M₂V₂Cl₂N₄O₈} (M=Co, Zn) framework have been prepared by solvothermal reactions. The new oxo‐alkoxide compounds were fully characterized by spectroscopic methods, magnetic susceptibility measurement, DFT and ab initio computational methods, and complete single‐crystal X‐ray diffraction structure analysis. The isostructural clusters are formed of edge‐sharing octahedral {VO₅N} and trigonal bipyramidal {MO₃NCl} units. Diethanolamine ligates the bimetallic lacunary double cubane core of1and2in an unusual two‐mode fashion, unobserved previously. In the crystalline state, the clusters of1and2are joined by hydrogen bonds to form a three‐dimensional network structure. Magnetic susceptibility data indicate weakly antiferromagnetic interactions between the vanadium centers [J_iso(V^IV−V^IV)=−5.4(1); −3.9(2) cm⁻¹], and inequivalent antiferromagnetic interactions between the cobalt and vanadium centers [J_iso(V^IV−Co^II)=−12.6 and −7.5 cm⁻¹] contained in1. 

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5. DFT Analysis of Methane C−H Activation and Over‐Oxidation by [Cu ₂ O] ²⁺ and [Cu ₂ O ₂ ] ²⁺ Sites in Zeolite Mordenite: Intra‐ versus Inter‐site Over‐Oxidation

   https://doi.org/10.1002/cphc.202100580  

   Panthi, Dipak; Adeyiga, Olajumoke; Odoh, Samuel_O (October 2021, ChemPhysChem)

   Abstract Methane over‐oxidation by copper‐exchanged zeolites prevents realization of high‐yield catalytic conversion. However, there has been little description of the mechanism for methane over‐oxidation at the copper active sites of these zeolites. Using density functional theory (DFT) computations, we reported that tricopper [Cu₃O₃]²⁺active sites can over‐oxidize methane. However, the role of [Cu₃O₃]²⁺sites in methane‐to‐methanol conversion remains under debate. Here, we examine methane over‐oxidation by dicopper [Cu₂O]²⁺and [Cu₂O₂]²⁺sites using DFT in zeolite mordenite (MOR). For [Cu₂O₂]²⁺, we considered the μ‐(η²:η²) peroxo‐, and bis(μ‐oxo) motifs. These sites were considered in the eight‐membered (8MR) ring of MOR. μ‐(η²:η²) peroxo sites are unstable relative to the bis(μ‐oxo) motif with a small interconversion barrier. Unlike [Cu₂O]²⁺which is active for methane C−H activation, [Cu₂O₂]²⁺has a very large methane C−H activation barrier in the 8MR. Stabilization of methanol and methyl at unreacted dicopper sites however leads to over‐oxidation via sequential hydrogen atom abstraction steps. For methanol, these are initiated by abstraction of the CH₃group, followed by OH and can proceed near 200 °C. Thus, for [Cu₂O]²⁺and [Cu₂O₂]²⁺species, over‐oxidation is an inter‐site process. We discuss the implications of these findings for methanol selectivity, especially in comparison to the intra‐site process for [Cu₃O₃]²⁺sites and the role of Brønsted acid sites. 

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