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1. Neural Network Models for Paraphrase Identification, Semantic Textual Similarity, Natural Language Inference, and Question Answering

   Lan, Wuwei; Xu, Wei. (August 2018, Proceedings of the 27th International Conference on Computational Linguistics)

   In this paper, we analyze several neural network designs (and their variations) for sentence pair modeling and compare their performance extensively across eight datasets, including paraphrase identification, semantic textual similarity, natural language inference, and question answering tasks. Although most of these models have claimed state-of-the-art performance, the original papers often reported on only one or two selected datasets. We provide a systematic study and show that (i) encoding contextual information by LSTM and inter-sentence interactions are critical, (ii) Tree-LSTM does not help as much as previously claimed but surprisingly improves performance on Twitter datasets, (iii) the Enhanced Sequential Inference Model is the best so far for larger datasets, while the Pairwise Word Interaction Model achieves the best performance when less data is available. We release our implementations as an open-source toolkit. 

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2. A Flexible Generative Framework for Graph-based Semi-supervised Learning

   Ma, Jiaqi; Tang, Weijing; Zhu, Ji; Mei, Qiaozhu (January 2019, 33rd Conference on Neural Information Processing Systems (NeurIPS 2019))

   We consider a family of problems that are concerned about making predictions for the majority of unlabeled, graph-structured data samples based on a small proportion of labeled samples. Relational information among the data samples, often encoded in the graph/network structure, is shown to be helpful for these semi-supervised learning tasks. However, conventional graph-based regularization methods and recent graph neural networks do not fully leverage the interrelations between the features, the graph, and the labels. In this work, we propose a flexible generative framework for graph-based semi-supervised learning, which approaches the joint distribution of the node features, labels, and the graph structure. Borrowing insights from random graph models in network science literature, this joint distribution can be instantiated using various distribution families. For the inference of missing labels, we exploit recent advances of scalable variational inference techniques to approximate the Bayesian posterior. We conduct thorough experiments on benchmark datasets for graph-based semi-supervised learning. Results show that the proposed methods outperform the state-of-the-art models in most settings. 

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3. Graph Representation Learning via Multi-task Knowledge Distillation

   Ma, Jiaqi; Mei, Qiaozhu (January 2019, 33rd Conference on Neural Information Processing Systems (NeurIPS 2019) Graph Representation Learning Workshop)

   Machine learning on graph structured data has attracted much research interest due to its ubiquity in real world data. However, how to efficiently represent graph data in a general way is still an open problem. Traditional methods use handcraft graph features in a tabular form but suffer from the defects of domain expertise requirement and information loss. Graph representation learning overcomes these defects by automatically learning the continuous representations from graph structures, but they require abundant training labels, which are often hard to fulfill for graph-level prediction problems. In this work, we demonstrate that, if available, the domain expertise used for designing handcraft graph features can improve the graph-level representation learning when training labels are scarce. Specifically, we proposed a multi-task knowledge distillation method. By incorporating network-theory-based graph metrics as auxiliary tasks, we show on both synthetic and real datasets that the proposed multi-task learning method can improve the prediction performance of the original learning task, especially when the training data size is small. 

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4. Neural Syntactic Preordering for Controlled Paraphrase Generation

   https://doi.org/10.18653/v1/2020.acl-main.22  

   Goyal, Tanya; Durrett, Greg (January 2020, Annual Meeting of the Association for Computational Linguistics)

   Paraphrasing natural language sentences is a multifaceted process: it might involve replacing individual words or short phrases, local rearrangement of content, or high-level restructuring like topicalization or passivization. Past approaches struggle to cover this space of paraphrase possibilities in an interpretable manner. Our work, inspired by pre-ordering literature in machine translation, uses syntactic transformations to softly "reorder" the source sentence and guide our neural paraphrasing model. First, given an input sentence, we derive a set of feasible syntactic rearrangements using an encoder-decoder model. This model operates over a partially lexical, partially syntactic view of the sentence and can reorder big chunks. Next, we use each proposed rearrangement to produce a sequence of position embeddings, which encourages our final encoder-decoder paraphrase model to attend to the source words in a particular order. Our evaluation, both automatic and human, shows that the proposed system retains the quality of the baseline approaches while giving a substantial increase in the diversity of the generated paraphrases. 

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5. Automatic Extraction of Protein-protein Interactions using Grammatical Relationship Graph

   Yu, Kaixian; Lung, Pei-Yau; Zhao, Tingting; Zhao, Peixiang; Tseng, Yan-Yuan; Zhang, Jinfeng (January 2018, BMC medical informatics and decision making)

   Background: Relationships between bio-entities (genes, proteins, diseases, etc.) constitute a significant part of our knowledge. Most of this information is documented as unstructured text in different forms, such as books, articles and on-line pages. Automatic extraction of such information and storing it in structured form could help researchers more easily access such information and also make it possible to incorporate it in advanced integrative analysis. In this study, we developed a novel approach to extract bio-entity relationships information using Nature Language Processing (NLP) and a graph-theoretic algorithm. Methods: Our method, called GRGT (Grammatical Relationship Graph for Triplets), not only extracts the pairs of terms that have certain relationships, but also extracts the type of relationship (the word describing the relationships). In addition, the directionality of the relationship can also be extracted. Our method is based on the assumption that a triplet exists for a pair of interactions. A triplet is defined as two terms (entities) and an interaction word describing the relationship of the two terms in a sentence. We first use a sentence parsing tool to obtain the sentence structure represented as a dependency graph where words are nodes and edges are typed dependencies. The shortest paths among the pairs of words in the triplet are then extracted, which form the basis for our information extraction method. Flexible pattern matching scheme was then used to match a triplet graph with unknown relationship to those triplet graphs with labels (True or False) in the database. Results: We applied the method on three benchmark datasets to extract the protein-protein-interactions (PPIs), and obtained better precision than the top performing methods in literature. Conclusions: We have developed a method to extract the protein-protein interactions from biomedical literature. PPIs extracted by our method have higher precision among other methods, suggesting that our method can be used to effectively extract PPIs and deposit them into databases. Beyond extracting PPIs, our method could be easily extended to extracting relationship information between other bio-entities. 

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