Abstract Natural language processing (NLP) techniques can enhance our ability to interpret plant science literature. Many state-of-the-art algorithms for NLP tasks require high-quality labelled data in the target domain, in which entities like genes and proteins, as well as the relationships between entities, are labelled according to a set of annotation guidelines. While there exist such datasets for other domains, these resources need development in the plant sciences. Here, we present the Plant ScIenCe KnowLedgE Graph (PICKLE) corpus, a collection of 250 plant science abstracts annotated with entities and relations, along with its annotation guidelines. The annotation guidelines were refined by iterative rounds of overlapping annotations, in which inter-annotator agreement was leveraged to improve the guidelines. To demonstrate PICKLE’s utility, we evaluated the performance of pretrained models from other domains and trained a new, PICKLE-based model for entity and relation extraction (RE). The PICKLE-trained models exhibit the second-highest in-domain entity performance of all models evaluated, as well as a RE performance that is on par with other models. Additionally, we found that computer science-domain models outperformed models trained on a biomedical corpus (GENIA) in entity extraction, which was unexpected given the intuition that biomedical literature is more similar to PICKLE than computer science. Upon further exploration, we established that the inclusion of new types on which the models were not trained substantially impacts performance. The PICKLE corpus is, therefore, an important contribution to training resources for entity and RE in the plant sciences.
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Corpus-Level Evaluation for Event QA: The IndiaPoliceEvents Corpus Covering the 2002 Gujarat Violence
Automated event extraction in social science applications often requires corpus-level evaluations: for example, aggregating text predictions across metadata and unbiased estimates of recall. We combine corpus-level evaluation requirements with a real-world, social science setting and introduce the IndiaPoliceEvents corpus—all 21,391 sentences from 1,257 English-language Times of India articles about events in the state of Gujarat during March 2002. Our trained annotators read and label every document for mentions of police activity events, allowing for unbiased recall evaluations. In contrast to other datasets with structured event representations, we gather annotations by posing natural questions, and evaluate off-the-shelf models for three different tasks: sentence classification, document ranking, and temporal aggregation of target events. We present baseline results from zero-shot BERT-based models fine-tuned on natural language inference and passage retrieval tasks. Our novel corpus-level evaluations and annotation approach can guide creation of similar social-science-oriented resources in the future.
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- PAR ID:
- 10281917
- Date Published:
- Journal Name:
- Findings of the Association for Computational Linguistics: ACL-IJCNLP 2021
- Page Range / eLocation ID:
- 4240 to 4253
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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