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1. Punctuated evolution in the learned songs of African sunbirds

   https://doi.org/10.1098/rspb.2021.2062  

   McEntee, Jay P.; Zhelezov, Gleb; Werema, Chacha; Najar, Nadje; Peñalba, Joshua V.; Mulungu, Elia; Mbilinyi, Maneno; Karimi, Sylvester; Chumakova, Lyubov; Gordon Burleigh, J.; et al (November 2021, Proceedings of the Royal Society B: Biological Sciences)

   Learned traits are thought to be subject to different evolutionary dynamics than other phenotypes, but their evolutionary tempo and mode has received little attention. Learned bird song has been thought to be subject to rapid and constant evolution. However, we know little about the evolutionary modes of learned song divergence over long timescales. Here, we provide evidence that aspects of the territorial songs of Eastern Afromontane sky island sunbirds Cinnyris evolve in a punctuated fashion, with periods of stasis of the order of hundreds of thousands of years or more, broken up by evolutionary pulses. Stasis in learned songs is inconsistent with learned traits being subject to constant or frequent change, as would be expected if selection does not constrain song phenotypes over evolutionary timescales. Learned song may instead follow a process resembling peak shifts on adaptive landscapes. While much research has focused on the potential for rapid evolution in bird song, our results suggest that selection can tightly constrain the evolution of learned songs over long timescales. More broadly, these results demonstrate that some aspects of highly variable, plastic traits can exhibit punctuated evolution, with stasis over long time periods. 

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2. Genetic Consequences of Biologically Altered Environments

   https://doi.org/10.1093/jhered/esab047  

   D’Aguillo, Michelle; Hazelwood, Caleb; Quarles, Brandie; Donohue, Kathleen (September 2021, Journal of Heredity)

   Hughes, Kim (Ed.)

   Abstract Evolvable traits of organisms can alter the environment those organisms experience. While it is well appreciated that those modified environments can influence natural selection to which organisms are exposed, they can also influence the expression of genetic variances and covariances of traits under selection. When genetic variance and covariance change in response to changes in the evolving, modified environment, rates and outcomes of evolution also change. Here we discuss the basic mechanisms whereby organisms modify their environments, review how those modified environments have been shown to alter genetic variance and covariance, and discuss potential evolutionary consequences of such dynamics. With these dynamics, responses to selection can be more rapid and sustained, leading to more extreme phenotypes, or they can be slower and truncated, leading to more conserved phenotypes. Patterns of correlated selection can also change, leading to greater or less evolutionary independence of traits, or even causing convergence or divergence of traits, even when selection on them is consistent across environments. Developing evolutionary models that incorporate changes in genetic variances and covariances when environments themselves evolve requires developing methods to predict how genetic parameters respond to environments—frequently multifactorial environments. It also requires a population-level analysis of how traits of collections of individuals modify environments for themselves and/or others in a population, possibly in spatially explicit ways. Despite the challenges of elucidating the mechanisms and nuances of these processes, even qualitative predictions of how environment-modifying traits alter evolutionary potential are likely to improve projections of evolutionary outcomes. 

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3. Genomic Basis of Convergent Island Phenotypes in Boa Constrictors

   https://doi.org/10.1093/gbe/evz226  

   Card, Daren C; Adams, Richard H; Schield, Drew R; Perry, Blair W; Corbin, Andrew B; Pasquesi, Giulia I; Row, Kristopher; Van Kleeck, Melissa J; Daza, Juan M; Booth, Warren; et al (November 2019, Genome Biology and Evolution)

   Abstract Convergent evolution is often documented in organisms inhabiting isolated environments with distinct ecological conditions and similar selective regimes. Several Central America islands harbor dwarf Boa populations that are characterized by distinct differences in growth, mass, and craniofacial morphology, which are linked to the shared arboreal and feast-famine ecology of these island populations. Using high-density RADseq data, we inferred three dwarf island populations with independent origins and demonstrate that selection, along with genetic drift, has produced both divergent and convergent molecular evolution across island populations. Leveraging whole-genome resequencing data for 20 individuals and a newly annotated Boa genome, we identify four genes with evidence of phenotypically relevant protein-coding variation that differentiate island and mainland populations. The known roles of these genes involved in body growth (PTPRS, DMGDH, and ARSB), circulating fat and cholesterol levels (MYLIP), and craniofacial development (DMGDH and ARSB) in mammals link patterns of molecular evolution with the unique phenotypes of these island forms. Our results provide an important genome-wide example for quantifying expectations of selection and convergence in closely related populations. We also find evidence at several genomic loci that selection may be a prominent force of evolutionary change—even for small island populations for which drift is predicted to dominate. Overall, while phenotypically convergent island populations show relatively few loci under strong selection, infrequent patterns of molecular convergence are still apparent and implicate genes with strong connections to convergent phenotypes. 

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4. Individual and population‐level variation in susceptibility to temperature in early life history stages of giant kelp

   https://doi.org/10.1111/maec.12770  

   Kurman, Melissa D.; terHorst, Casey (August 2023, Marine Ecology)

   Abstract Because foundation species create structure in a community, understanding their ecological and evolutionary responses to global change is critical for predicting the ecological and economic management of species and communities that rely on them. Giant kelp (Macrocystis pyrifera) is a globally distributed foundation species with seasonal fluctuations in abundance in response to local nutrient levels, storm intensity, and ocean temperatures. Here we examine genetic variation in individual and population‐level responses of early life history stages (zoospore settlement, survival, and gametogenesis) to increased temperatures to determine the potential for natural selection on temperature‐tolerant individuals that would allow adaptation to a changing climate. We collected fertileM. pyriferasporophyll blades from three sites along the California coast (Los Angeles, Santa Barbara, Monterey Bay) and induced zoospore release in the lab. Spores settled on microscope slides at three treatment temperatures (16, 20, and 22°C), matured for 21 days, and were imaged weekly to determine settlement, survival, and maturation success. On average, individuals from all sites showed lower rates of settlement and maturation in response to increasing temperature. However, the magnitude of the responses to temperature varied among populations. Survival tended to increase with temperature in Los Angeles and Santa Barbara populations but decreased with increasing temperature for the Monterey Bay population. We observed little genetic variation in temperature responses among individuals within sites, suggesting little scope for evolution within populations to increase the resilience ofM. pyriferapopulations to warming ocean temperatures and predicted declines in kelp abundance. Yet sufficient dispersal among populations could allow for adaptation of early life history traits among populations via evolutionary rescue of declining populations. 

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5. The ecological causes and consequences of hard and soft selection

   https://doi.org/10.1111/ele.13754  

   Bell, Donovan_A; Kovach, Ryan_P; Robinson, Zachary_L; Whiteley, Andrew_R; Reed, Thomas_E; De_Meester, ed., Luc (April 2021, Ecology Letters)

   Abstract Interactions between natural selection and population dynamics are central to both evolutionary‐ecology and biological responses to anthropogenic change. Natural selection is often thought to incur a demographic cost that, at least temporarily, reduces population growth. However, hard and soft selection clarify that the influence of natural selection on population dynamics depends on ecological context. Under hard selection, an individual's fitness is independent of the population's phenotypic composition, and substantial population declines can occur when phenotypes are mismatched with the environment. In contrast, under soft selection, an individual's fitness is influenced by its phenotype relative to other interacting conspecifics. Soft selection generally influences which, but not how many, individuals survive and reproduce, resulting in little effect on population growth. Despite these important differences, the distinction between hard and soft selection is rarely considered in ecology. Here, we review and synthesize literature on hard and soft selection, explore their ecological causes and implications and highlight their conservation relevance to climate change, inbreeding depression, outbreeding depression and harvest. Overall, these concepts emphasise that natural selection and evolution may often have negligible or counterintuitive effects on population growth—underappreciated outcomes that have major implications in a rapidly changing world. 

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