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Dyck-reachability is a fundamental formulation for program analysis, which has been widely used to capture properly-matched-parenthesis program properties such as function calls/returns and field writes/reads. Bidirected Dyck-reachability is a relaxation of Dyck-reachability on bidirected graphs where each edge u → ( i v labeled by an open parenthesis “( i ” is accompanied with an inverse edge v → ) i u labeled by the corresponding close parenthesis “) i ”, and vice versa. In practice, many client analyses such as alias analysis adopt the bidirected Dyck-reachability formulation. Bidirected Dyck-reachability admits an optimal reachability algorithm. Specifically, given a graph with n nodes and m edges, the optimal bidirected Dyck-reachability algorithm computes all-pairs reachability information in O ( m ) time. This paper focuses on the dynamic version of bidirected Dyck-reachability. In particular, we consider the problem of maintaining all-pairs Dyck-reachability information in bidirected graphs under a sequence of edge insertions and deletions. Dynamic bidirected Dyck-reachability can formulate many program analysis problems in the presence of code changes. Unfortunately, solving dynamic graph reachability problems is challenging. For example, even for maintaining transitive closure, the fastest deterministic dynamic algorithm requires O ( n 2 ) update time to achieve O (1) query time. All-pairs Dyck-reachability is a generalization of transitive closure. Despite extensive research on incremental computation, there is no algorithmic development on dynamic graph algorithms for program analysis with worst-case guarantees. Our work fills the gap and proposes the first dynamic algorithm for Dyck reachability on bidirected graphs. Our dynamic algorithms can handle each graph update ( i.e. , edge insertion and deletion) in O ( n ·α( n )) time and support any all-pairs reachability query in O (1) time, where α( n ) is the inverse Ackermann function. We have implemented and evaluated our dynamic algorithm on an alias analysis and a context-sensitive data-dependence analysis for Java. We compare our dynamic algorithms against a straightforward approach based on the O ( m )-time optimal bidirected Dyck-reachability algorithm and a recent incremental Datalog solver. Experimental results show that our algorithm achieves orders of magnitude speedup over both approaches.
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Computing Zigzag Persistence on Graphs in Near-Linear Time
Graphs model real-world circumstances in many applications where they may constantly change to capture the dynamic behavior of the phenomena. Topological persistence which provides a set of birth and death pairs for the topological features is one instrument for analyzing such changing graph data. However, standard persistent homology defined over a growing space cannot always capture such a dynamic process unless shrinking with deletions is also allowed. Hence, zigzag persistence which incorporates both insertions and deletions of simplices is more appropriate in such a setting. Unlike standard persistence which admits nearly linear-time algorithms for graphs, such results for the zigzag version improving the general O(m^ω) time complexity are not known, where ω < 2.37286 is the matrix multiplication exponent. In this paper, we propose algorithms for zigzag persistence on graphs which run in near-linear time. Specifically, given a filtration with m additions and deletions on a graph with n vertices and edges, the algorithm for 0-dimension runs in O(mlog² n+mlog m) time and the algorithm for 1-dimension runs in O(mlog⁴ n) time. The algorithm for 0-dimension draws upon another algorithm designed originally for pairing critical points of Morse functions on 2-manifolds. The algorithm for 1-dimension pairs a negative edge with the earliest positive edge so that a 1-cycle containing both edges resides in all intermediate graphs. Both algorithms achieve the claimed time complexity via dynamic graph data structures proposed by Holm et al. In the end, using Alexander duality, we extend the algorithm for 0-dimension to compute the (p-1)-dimensional zigzag persistence for ℝ^p-embedded complexes in O(mlog² n+mlog m+nlog n) time.
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- Award ID(s):
- 2049010
- PAR ID:
- 10283551
- Date Published:
- Journal Name:
- Leibniz international proceedings in informatics
- Volume:
- 189
- ISSN:
- 1868-8969
- Page Range / eLocation ID:
- 30:1-30:15
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Conference Paper:
- https://doi.org/10.4230/LIPIcs.SoCG.2021.30
