The title chlorin, 2 Ph H 2 , hydrogen-bonded to dimethylaminopyridine (DMAP), C 44 H 32 N 4 O 2 ·C 7 H 10 N 2 , and its corresponding zinc(II) complex, 2 Ph Zn , axially coordinated to ethylenediamine (EDA), [Zn(C 44 H 30 N 4 O 2 )]·C 2 H 8 N 2 , were isolated and crystallized by adventitious reduction of the corresponding osmate esters by DMAP and EDA, respectively. Known since 1996 and, inter alia , used for the preparation of a wide range of (planar and non-planar) chlorin analogues (so-called pyrrole-modified porphyrins), their conformational analyses in the solid state are important benchmarks. Both macrocycles are only modestly distorted from planarity and both are slightly more non-planar than the corresponding dimethoxy-derivative, but less planar than a free-base meso -pentafluorophenyl-based osmate ester. NSD analyses provide quantitative and qualitative analyses of the distortion modes. One origin of the non-planarity is presumably the avoidance of the eclipsed configuration of the two vic–cis diols on the pyrroline moiety; the resulting deformation of the pyrroline translates in some cases into the macrocycle. The structure of 2 Ph H 2 features voids making up ca 26% of the unit-cell volume filled with highly disordered solvate molecules (chloroform and hexanes). 2 Ph Zn crystallized with a 13.6 (4)% occupied solvate methanol molecule.
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Crystal structure of 2,3-dimethoxy- meso -tetrakis(pentafluorophenyl)morpholinochlorin methylene chloride 0.44-solvate
The title morpholinochlorin, C 46 H 16 F 20 N 4 O 3 , was crystallized from hexane/methylene chloride as its 0.44 methylene chloride solvate, C 46 H 16 F 20 N 4 O 3 ·0.44CH 2 Cl 2 . The morpholinochlorin was synthesized by stepwise oxygen insertion into a porphyrin using a `breaking and mending strategy': NaIO 4 -induced diol cleavage of the corresponding 2,3-dihydroxychlorin with in situ methanol-induced, acid-catalyzed intramolecular ring closure of the intermediate secochlorins bisaldehyde. Formally, one of the pyrrolic building blocks was thus replaced by a 2,3-dimethoxymorpholine moiety. Like other morpholinochlorins, the macrocycle of the title compound adopts a ruffled conformation, and the modulation of the porphyrinic π-system chromophore induces a red-shift of its optical spectrum compared to its corresponding chlorin analog. Packing in the crystal is governed by interactions involving the fluorine atoms of the pentafluorophenyl substituents, dominated by C—H...F interactions, and augmented by short fluorine...fluorine contacts, C—F...π interactions, and one severely slipped π-stacking interaction between two pentafluorophenyl rings. The solvate methylene chloride molecule is disordered over two independent positions around an inversion center with occupancies of two × 0.241 (5) and two × 0.199 (4), for a total site occupancy of 88%.
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- Award ID(s):
- 1800361
- PAR ID:
- 10283560
- Date Published:
- Journal Name:
- Acta Crystallographica Section E Crystallographic Communications
- Volume:
- 76
- Issue:
- 8
- ISSN:
- 2056-9890
- Page Range / eLocation ID:
- 1222 to 1228
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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