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Variability in gene expression causes genetically identical cells to exhibit different phenotypes. One probable cause of this variability is transcriptional bursting, where the synthesis of RNA molecules randomly alternates with periods of silence in the transfer of genetic information. Yet, the molecular mechanisms behind this variability remain unclear. Experiments indicate that multiple biochemical states might be involved in the production of RNA molecules. Stimulated by these observations, we developed a theoretical framework to investigate the mechanisms of transcriptional bursting. It is based on a multi-state stochastic approach that provides a full quantitative description of the dynamic properties in the system. We found that the degree of stochastic fluctuations during transcription directly correlates with the number of biochemical states. This explains experimentally observed variability and fluctuations in the quantities of the produced RNA molecules. The procedure to estimate the number of relevant biochemical states participating in the transcription is outlined and applied for analysis of experimental results. We also developed a general dynamic phase diagram for the transcription process. The presented theoretical method clarifies physical−chemical aspects of the transcriptional bursting and presents a minimal chemical-kinetic description of the process.
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Understanding the molecular mechanisms of transcriptional bursting
In recent years, it has been experimentally established that transcription, a fundamental biological process that involves the synthesis of messenger RNA molecules from DNA templates, does not proceed continuously as was expected. Rather, it exhibits a distinct dynamic behavior of alternating between productive phases when RNA molecules are actively synthesized and inactive phases when there is no RNA production at all. The bimodal transcriptional dynamics is now confirmed to be present in most living systems. This phenomenon is known as transcriptional bursting and it attracts significant amounts of attention from researchers in different fields. However, despite multiple experimental and theoretical investigations, the microscopic origin and biological functions of the transcriptional bursting remain unclear. Here we discuss the recent developments in uncovering the underlying molecular mechanisms of transcriptional bursting and our current understanding of them. Our analysis presents a physicochemical view of the processes that govern transcriptional bursting in living cells.
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- PAR ID:
- 10298905
- Date Published:
- Journal Name:
- Physical Chemistry Chemical Physics
- Volume:
- 23
- Issue:
- 38
- ISSN:
- 1463-9076
- Page Range / eLocation ID:
- 21399 to 21406
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1039/d1cp03665c
